PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551438.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 405aa    MW: 46117.5 Da    PI: 6.6606
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-15125170147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g W + Ed +l ++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
   XP_010551438.1 125 KGHWRPAEDNKLRELVAVYGPQNWNLIAEKLH-GRSGKSCRLRWFNQ 170
                      689*****************************.***********996 PP
2Myb_DNA-binding56.18.4e-18177220146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l +a++++G++ W+ I+r ++ gRt++ +k++w+ 
   XP_010551438.1 177 RRAFTEEEEERLMQAHRLYGNK-WAMISRLFP-GRTDNAVKNHWHV 220
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.464120171IPR017930Myb domain
SuperFamilySSF466899.36E-29123218IPR009057Homeodomain-like
SMARTSM007171.4E-13124173IPR001005SANT/Myb domain
PfamPF002492.5E-15125170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-26126178IPR009057Homeodomain-like
CDDcd001672.20E-12128169No hitNo description
PROSITE profilePS5129427.055172226IPR017930Myb domain
SMARTSM007172.0E-14176224IPR001005SANT/Myb domain
PfamPF002491.3E-14177219IPR001005SANT/Myb domain
CDDcd001672.50E-11179219No hitNo description
Gene3DG3DSA:1.10.10.601.3E-20179225IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEMVYADMAS LSITPLLVSS SSDLTSSSRY RNNAVLSEDL SWMDQINAPR SWDVPFNIEN  60
GHRLFNRSDF EVGCLQNPIN LNNGVVKEEI SDPNYSSSEI SGGKEEEADN VNGKGKSSSK  120
ASVSKGHWRP AEDNKLRELV AVYGPQNWNL IAEKLHGRSG KSCRLRWFNQ LDPRINRRAF  180
TEEEEERLMQ AHRLYGNKWA MISRLFPGRT DNAVKNHWHV IMARKYREHS TSYRRRKMIT  240
LKPLPNPNPN PDPSPNHTFN HDQQHFPEFS HGGLPLTHLG NSPNPSDLQQ QLILPFHLFQ  300
GFEGNEGIMV GMFGNQMMDP FDQPNTHKIA PGFNDGPCHN IPPIMREATD DFHYIDPRNQ  360
TAYQKDSYAP AAEEVTRGKI VVLDRMSNDH QPPPPFFDFL GVGET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-321252257107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551438.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551438.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLD7KQL71e-106D7KQL7_ARALL; T24P13.16
STRINGXP_010551438.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.21e-89myb domain protein 117