PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010551309.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 451aa MW: 50907.1 Da PI: 4.8901 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.6 | 4.5e-31 | 51 | 185 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....s 80 lp+G++F+P+d+e++ +L++kv + +e+i++vd i++++P++Lp vk++ +fF+++ k+y+tg+rk+r+++ + XP_010551309.1 51 LPRGVKFDPSDQEII-WHLQAKVGLPGlrphpfI--DEFIPTVDeddgICYTHPKNLP-GVKQDGLVSHFFHRSIKAYNTGTRKRRKIHdddfgD 141 799************.88****987765565332..334665544556**********.666777788******************865556558 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +W++tg++k+v++ +g ++g+kk++v+y g++ kt+Wvmh+y+l XP_010551309.1 142 VRWHKTGRTKPVIV-DGVQKGCKKIMVLYGGKSG---KTNWVMHQYHL 185 89************.99************65554...6********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-37 | 36 | 204 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.661 | 51 | 204 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-13 | 52 | 185 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 451 aa Download sequence Send to blast |
MDGNRFATKI KSASASSNPQ KVAWKSNPTR HCPNCHHVID NSDVVGDWPG LPRGVKFDPS 60 DQEIIWHLQA KVGLPGLRPH PFIDEFIPTV DEDDGICYTH PKNLPGVKQD GLVSHFFHRS 120 IKAYNTGTRK RRKIHDDDFG DVRWHKTGRT KPVIVDGVQK GCKKIMVLYG GKSGKTNWVM 180 HQYHLGTEED EKDGEYVVSK IFYQQQQQSV KQVGKAEAEV TEDIFAVTPQ VDPVTPKLVT 240 PEPRHAERNC SDFHFLTKSV TAHAQTAESG YMRNEVLPNC KRASPEDEPG PKHEEYGTRD 300 DNEPSPDDEP EPEHEEYRTG DDNENGVKDK EDADHAEEDP KWWDSGSQNI LNSQQLVEAL 360 SLCDDLLQSQ SPKRGENTDD EGNQGTKIKP RLSDYARLGT DDFKRDLEEC QNIDLDPSNI 420 ELDTPPEFRL SQLEFGSQES FLAWGGGKTI E |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010551309.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551309.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X3 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A178WLI1 | 0.0 | A0A178WLI1_ARATH; SOG1 | ||||
STRING | XP_010551307.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |