PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551303.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family RAV
Protein Properties Length: 366aa    MW: 40475.4 Da    PI: 8.8837
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551303.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.24.1e-1367115155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykGV   + +grW A+I++      + r++lg+f  + eAa+a++ a+++++g
  XP_010551303.1  67 SKYKGVVPQP-NGRWGAQIYEK-----HHRVWLGTFNEEAEAARAYDIAARRFRG 115
                     89****9888.8*********3.....5**********99*************98 PP
2B3100.59.9e-32199301192
                     EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k+ tpsdv+k++rlv+pk++ae+h           g ++++++ + +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F++
  XP_010551303.1 199 FEKAVTPSDVGKLNRLVIPKQHAEKHfplptsssngnGTSSTKGVLMNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFER 293
                     89*******************************9999778889***************************************************7 PP

                     -SSSEE.. CS
              B3  85 dgrsefel 92 
                     +   +++l
  XP_010551303.1 294 STGPDRQL 301
                     75566555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-1767123IPR016177DNA-binding domain
CDDcd000181.72E-2567122No hitNo description
PfamPF008475.2E-867115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2068123IPR001471AP2/ERF domain
SMARTSM003807.7E-2868129IPR001471AP2/ERF domain
PROSITE profilePS5103219.96868123IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.2E-41188313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-31196310IPR015300DNA-binding pseudobarrel domain
CDDcd100173.80E-28198294No hitNo description
PfamPF023622.8E-28199301IPR003340B3 DNA binding domain
PROSITE profilePS5086313.747199311IPR003340B3 DNA binding domain
SMARTSM010192.0E-24199307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDSMSCIDES TTSTDSFPPA APAADTPSKL PAPPAVKLYR MGSGGSVVSD SDNVIGVETE  60
SRKLPSSKYK GVVPQPNGRW GAQIYEKHHR VWLGTFNEEA EAARAYDIAA RRFRGRDAVT  120
NFKSPAADGE RDCQSDAESA FLEAHSKAEI VDMLRKHTYE EELEQSKRRF HLSGVDGDGN  180
RNGTGQNDDA GKKTREVLFE KAVTPSDVGK LNRLVIPKQH AEKHFPLPTS SSNGNGTSST  240
KGVLMNFEDV TGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KNLRAGDVVS FERSTGPDRQ  300
LYIDCKIRSE PEKNPVQVVR LFGVDILSAP TPPPNDVVPV CGGKRSRDRD LFTLGCSKKQ  360
MIINAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-5919630911118DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551303.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551303.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822801e-175RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A087HGQ91e-174A0A087HGQ9_ARAAL; Ap2 erf and b3 domain-containing transcription factor rav2
STRINGXP_010551303.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-155related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]