PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551268.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CO-like
Protein Properties Length: 424aa    MW: 46938.4 Da    PI: 5.1367
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.62.5e-081356340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+ + + +++++C  ++ +lC+ C  + H+       H++v
  XP_010551268.1 13 ARACDSCVKRRARWYCAADDAFLCQVCDGSVHSAnplarrHERV 56
                    578*****************************657888888876 PP
2CCT682.4e-23368411144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  XP_010551268.1 368 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 411
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.8E-111158IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8221158IPR000315B-box-type zinc finger
PfamPF006439.6E-71356IPR000315B-box-type zinc finger
CDDcd000212.85E-101458No hitNo description
PROSITE profilePS5101716.083368410IPR010402CCT domain
PfamPF062037.1E-18368410IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MKSLSNAVGA KTARACDSCV KRRARWYCAA DDAFLCQVCD GSVHSANPLA RRHERVRLKS  60
ASSVPPPGPA TWHHGFARKA RTPRGGGGRK KTNHRAIFHD LVPEISAEDQ TENYEEEQLI  120
CQVPVLDHPM AESNTSFPLP VRMKFADIKD KDDDQDNAES CLNGFFPSDM ELAEFAADVE  180
TLLGHGLETE SFAMEELGLG YGSLSCGRSS SMVLKVEEEE EKEGTTTELS CDRGDVDVTP  240
FELSFDYESH KTCAEEEEEE EDDKQNVINF NTGEGENETS GSGRSTIKDD EEEKGKGKKT  300
KILMLRLDYE SVISSWGGQG PPWTAGEPPE LDLKNDSWPI SMGEVNGGQY GSGICGVGLT  360
MAMGDVGREA RVSRYREKRR TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR ASLSALASSI  420
PGAY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1378394RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551268.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551268.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD01e-154COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A1J3JND81e-158A0A1J3JND8_NOCCA; Zinc finger protein CONSTANS-LIKE 16
STRINGXP_010551268.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-138B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]