PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551162.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 355aa    MW: 40247 Da    PI: 9.462
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551162.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP135.93.4e-421222802136
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaesssss 81 
                     a k+drhski+T++g+RdRR+Rls+e+a++fF Lqd+LGfdk+skt+ WLl+qakp+ik+l+++               +               
  XP_010551162.1 122 ASKTDRHSKIYTAKGLRDRRMRLSLEVAREFFGLQDMLGFDKASKTVSWLLTQAKPEIKKLARSppqqfnnglsseesqT--------------- 201
                     789*************************************************************5444443332222110............... PP

             TCP  82 as...nsssg.........................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                              +                         ++++++ k+k+sq+++   +++ k+ r kar+ra+ert+ek ++k+++
  XP_010551162.1 202 -RrpdL---DevasgwigqegsnmnkvasaatkemEEKSAKDKKKRSQSRNPILRKIPKDARVKARERAKERTKEKLMMKERS 280
                     .11220...12333444444445667777777775444444466666666667799999********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.8E-42123276IPR005333Transcription factor, TCP
PROSITE profilePS5136933.838124182IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.138256273IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MANTNDLVFW PYNDHSSRIL PAFIPSPSFH GILSNPNPKP ISEAIPQFEF DPESLYAVFL  60
QPNNENDNRN PYHHYQTSLN LLPLNKTVED QSFDASETNV RMEDSKEISN HRVPTQASKK  120
RASKTDRHSK IYTAKGLRDR RMRLSLEVAR EFFGLQDMLG FDKASKTVSW LLTQAKPEIK  180
KLARSPPQQF NNGLSSEESQ TRRPDLDEVA SGWIGQEGSN MNKVASAATK EMEEKSAKDK  240
KKRSQSRNPI LRKIPKDARV KARERAKERT KEKLMMKERS ASEAVVHHMK TSDVNDHLGT  300
NSNWSSFETG EDSVQGMEEP SPSNGFVACN NTGMSDVAQE SMTIINKWSP FSIFN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551162.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551162.10.0PREDICTED: transcription factor TCP18-like isoform X2
TrEMBLR0G5222e-70R0G522_9BRAS; Uncharacterized protein
TrEMBLR0G5F62e-70R0G5F6_9BRAS; Uncharacterized protein
STRINGXP_010551161.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.26e-56TCP family protein