PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551144.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 735aa    MW: 83352.3 Da    PI: 10.0828
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.7e-09380425146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r +WT+eEd+ l+  +++ G ++W  Ia+ +g+ Rt+ qc  r+q 
   XP_010551144.1 380 RSAWTAEEDKNLLLIIQEKGIKDWLCIAELLGTSRTPFQCLARYQR 425
                      789*****************************************96 PP
2Myb_DNA-binding42.51.5e-13435477346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+e+d++l  av+ +G ++W ++a+ +  gRt+ qc +rw k
   XP_010551144.1 435 VWTEEDDDQLRAAVEVYGEKDWQAVASVLK-GRTGPQCSNRWKK 477
                      6****************************9.***********98 PP
3Myb_DNA-binding55.41.4e-17487530246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      grW+ eEd++l+ avk +G ++W++Ia++++ gRt+ qc++rw +
   XP_010551144.1 487 GRWSSEEDKRLKVAVKFFGAKNWHKIAQYVP-GRTPPQCRERWVN 530
                      8******************************.***********87 PP
4Myb_DNA-binding414.3e-13538580145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r +WT+ Ed  l  av+ lG   W++Ia +++  Rt++qc  rw 
   XP_010551144.1 538 RSPWTEVEDAELRAAVADLGHS-WSRIATRLP-SRTDNQCWRRWK 580
                      789*****************88.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.25284376IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-8288303IPR009057Homeodomain-like
PROSITE profilePS500905.297320374IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.5E-8346381IPR009057Homeodomain-like
SuperFamilySSF466891.95E-14355419IPR009057Homeodomain-like
PROSITE profilePS500909.524375427IPR017877Myb-like domain
SMARTSM007178.9E-8379429IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-11382429IPR009057Homeodomain-like
PfamPF139215.4E-8383431No hitNo description
SuperFamilySSF466895.17E-19413483IPR009057Homeodomain-like
PROSITE profilePS5129420.11428483IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-15432483IPR009057Homeodomain-like
SMARTSM007172.0E-13432481IPR001005SANT/Myb domain
PfamPF002496.3E-12435477IPR001005SANT/Myb domain
CDDcd001671.86E-11436479No hitNo description
SuperFamilySSF466891.97E-26484579IPR009057Homeodomain-like
PROSITE profilePS5129413.403484532IPR017930Myb domain
SMARTSM007171.5E-15485534IPR001005SANT/Myb domain
PfamPF002492.1E-15487530IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-22487537IPR009057Homeodomain-like
CDDcd001673.52E-13488532No hitNo description
PROSITE profilePS5129423.195533587IPR017930Myb domain
SMARTSM007172.2E-11537585IPR001005SANT/Myb domain
PfamPF002491.0E-11538580IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-18538582IPR009057Homeodomain-like
CDDcd001674.22E-9540582No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MVSAAKEEAG RISAVLLRRT PAAVGWVGLP RIPTAKTTSR CFAALGTSSP CHWMYARRWS  60
RSLFCRRMGF SMTMMTTKKK PWKPYALFVS NSLLMKFPVW GEISWMIFQG RNSSFPDHQQ  120
PCHTVLNSEA INTGSDFLDA NEKAVAEPLD QPGTHGSSLL QAGGSSLPEF AHALFYAIKK  180
NRSYQRLLQE KLTKIEATIE QNKKLMEKVK IFKDCQAYCK KIAGQALSQK MDYRIQLLST  240
RKSGPSDSSE GNGKKASPLL FGPPENPRVA NYQMAMAKYP LSVDRRCWSA AEIENLGKGL  300
RQQIQDRLLS DAIDRSSEGS TNDADTIVQT IRDLEIPPEM IRQFLPEVNW DLLASRYVKH  360
RSGAECEARW MNWEDPLINR SAWTAEEDKN LLLIIQEKGI KDWLCIAELL GTSRTPFQCL  420
ARYQRSLNAS ILERVWTEED DDQLRAAVEV YGEKDWQAVA SVLKGRTGPQ CSNRWKKSLH  480
PKRQRVGRWS SEEDKRLKVA VKFFGAKNWH KIAQYVPGRT PPQCRERWVN SLDPNVNRSP  540
WTEVEDAELR AAVADLGHSW SRIATRLPSR TDNQCWRRWK ALYPHQVPLI QEARRLRREA  600
IVGNFVDRES ERPALGVGDL VALPMISPLL EPDPESEIVA STKKRKRTVK KKPGIEGKAN  660
EASCAAKKSR SRRCGKGQEG CSSELSGLEE ENVCEINNPK PKRKAVTNQS LKNRGRSRRG  720
SEHKEAEVVQ EHTMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-323495874159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-323495874159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1642647KKRKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551144.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551144.10.0PREDICTED: snRNA-activating protein complex subunit 4 homolog isoform X3
TrEMBLA0A087HAI30.0A0A087HAI3_ARAAL; Myb domain protein 4r1
STRINGXP_010551141.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.20.0myb domain protein 4r1