PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551142.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 778aa    MW: 86901.7 Da    PI: 5.5803
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551142.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-08460505146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r +WT+eEd+ l+  +++ G ++W  Ia+ +g+ Rt+ qc  r+q 
   XP_010551142.1 460 RSAWTAEEDKNLLLIIQEKGIKDWLCIAELLGTSRTPFQCLARYQR 505
                      789*****************************************96 PP
2Myb_DNA-binding42.41.6e-13515557346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+e+d++l  av+ +G ++W ++a+ +  gRt+ qc +rw k
   XP_010551142.1 515 VWTEEDDDQLRAAVEVYGEKDWQAVASVLK-GRTGPQCSNRWKK 557
                      6****************************9.***********98 PP
3Myb_DNA-binding55.41.5e-17567610246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      grW+ eEd++l+ avk +G ++W++Ia++++ gRt+ qc++rw +
   XP_010551142.1 567 GRWSSEEDKRLKVAVKFFGAKNWHKIAQYVP-GRTPPQCRERWVN 610
                      8******************************.***********87 PP
4Myb_DNA-binding40.94.6e-13618660145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r +WT+ Ed  l  av+ lG   W++Ia +++  Rt++qc  rw 
   XP_010551142.1 618 RSPWTEVEDAELRAAVADLGHS-WSRIATRLP-SRTDNQCWRRWK 660
                      789*****************88.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.25364456IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-8368383IPR009057Homeodomain-like
PROSITE profilePS500905.297400454IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.4E-8426461IPR009057Homeodomain-like
SuperFamilySSF466891.41E-16435504IPR009057Homeodomain-like
PROSITE profilePS500909.524455507IPR017877Myb-like domain
SMARTSM007178.9E-8459509IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-11462507IPR009057Homeodomain-like
PfamPF139215.8E-8463511No hitNo description
SuperFamilySSF466895.53E-19493563IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-16508563IPR009057Homeodomain-like
PROSITE profilePS5129420.11508563IPR017930Myb domain
SMARTSM007172.0E-13512561IPR001005SANT/Myb domain
PfamPF002496.7E-12515557IPR001005SANT/Myb domain
CDDcd001674.53E-12516559No hitNo description
PROSITE profilePS5129413.403564612IPR017930Myb domain
SuperFamilySSF466892.01E-26564659IPR009057Homeodomain-like
SMARTSM007171.5E-15565614IPR001005SANT/Myb domain
PfamPF002492.3E-15567610IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-22567617IPR009057Homeodomain-like
CDDcd001677.83E-14568612No hitNo description
PROSITE profilePS5129423.195613667IPR017930Myb domain
SMARTSM007172.2E-11617665IPR001005SANT/Myb domain
PfamPF002491.1E-11618660IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-18618662IPR009057Homeodomain-like
CDDcd001671.10E-9620662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MARHSLYGGK DNDVEYYGED DDEDNEDDGI DEDIESIRRA CIIAGANPDE IIPPTDGFGS  60
EGGGGENQCG SAAANTGGGG VGRVASDSDS EDDLEMLRSI RNQFALSLDV CEALEPLAVL  120
PPDGFFDDDD DNEEEALETL RAIRKQFSAY EISGVGGNFM DDLSGKKQQV HASGTASGNE  180
TSSEILGRSN TCDSFPDHQQ PCHTVLNSEA INTGSDFLDA NEKAVAEPLD QPGTHGSSLL  240
QAGGSSLPEF AHALFYAIKK NRSYQRLLQE KLTKIEATIE QNKKLMEKVK IFKDCQAYCK  300
KIAGQALSQK MDYRIQLLST RKSGPSDSSE GNGKKASPLL FGPPENPRVA NYQMAMAKYP  360
LSVDRRCWSA AEIENLGKGL RQQIQDRLLS DAIDRSSEGS TNDADTIVQT IRDLEIPPEM  420
IRQFLPEVNW DLLASRYVKH RSGAECEARW MNWEDPLINR SAWTAEEDKN LLLIIQEKGI  480
KDWLCIAELL GTSRTPFQCL ARYQRSLNAS ILERVWTEED DDQLRAAVEV YGEKDWQAVA  540
SVLKGRTGPQ CSNRWKKSLH PKRQRVGRWS SEEDKRLKVA VKFFGAKNWH KIAQYVPGRT  600
PPQCRERWVN SLDPNVNRSP WTEVEDAELR AAVADLGHSW SRIATRLPSR TDNQCWRRWK  660
ALYPHQVPLI QEARRLRREA IVGNFVDRES ERPALGVGDL VALPMISPLL EPDPESEIVA  720
STKKRKRTVK KKPGIEVLLR RADQGGVGKA KRDVLLSCLD LKKKMCAKLI IQNPKGRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-314296594159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-314296594159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1722727KKRKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551142.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551142.10.0PREDICTED: uncharacterized protein LOC104821834 isoform X2
TrEMBLD7L7Z60.0D7L7Z6_ARALL; MYB4R1
STRINGXP_010551141.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1