PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010551055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 1154aa MW: 129312 Da PI: 9.3493 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 8.7e-10 | 44 | 79 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e+++da +++G++ Wk++a+ + +R+ +++ XP_010551055.1 44 QWSKEELERFYDAYRKFGKE-WKKVAAFVR-TRSIEMV 79 6*******************.*********.**98876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.08E-10 | 39 | 90 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-4 | 41 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-4 | 44 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-8 | 44 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.55E-5 | 45 | 87 | No hit | No description |
SMART | SM01135 | 1.9E-56 | 630 | 731 | IPR033471 | DIRP domain |
Pfam | PF06584 | 9.7E-31 | 630 | 730 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1154 aa Download sequence Send to blast |
MAPSKKSKYK KASRVNVVSP NKDEENKSKT RQRKRKLSDM LGPQWSKEEL ERFYDAYRKF 60 GKEWKKVAAF VRTRSIEMVE ALYTMNKAYL SLPEGTASVV GLIAMMTDHY TVLHGGSDSE 120 QESNEGTNTP RKGQKLARVK SSDHLSKGLE GLSDRLQFRS SSGSLSLLKR RRTETVPRAV 180 GKRTPRIPVS FSREKDKRER YLSPVKRGLK LKGDAIDDDM EHEIALALAE ALQRGGSPQV 240 SRTPNRKEKM YSPYKKDEKM RAEIDMAIAK LHSSDMDEGG CELSLGSTEA DNGDFAGPRN 300 YLMHGEGSSA VEMLQKGKRY YMQKLDVDES PNNRTDDVKE ACSGTEEGQH LGPCKDKFEP 360 EGVVENSSKP TYKSSRRKSK KVLFTADEGA ACDALQTLAD LSLMMPDTAT DTESSIQVKE 420 ERAAKADESD LKGSGPAPRS KMGSLKFSKQ RKSTTDVLSN TEAERKSPSS IVMRKRRQKS 480 SPVKVPKDEA PSSSQFAESP NRKGIDEGKR PVGRGKRSTN IPNSHGKKSV KHHDHTSSSN 540 GIVEGNGTAL STAQTYKKQV NLPTKGRRRR KTPAEKLLTD EDGKSSEILV NGFSNTQIQS 600 LNDKSLNLKE KLSHYLSSYR SRRWCVFEWF YSAIDYPWFS RQEFVEYLDH VGLGHVPRFT 660 RVEWGVIRSS LGKPRRFSEQ FLKEEKEKLY LYRDSVRKYY VKLNAGVREG LPTDLARPLN 720 VGQRVIALHP RTREIHDGSV LTFDHSKYRV QFDHSDLGVE FVKDTECMPL NPLQNIPASL 780 AQQYVSLNHH IQNHSMLKMH EQEIENMPEG YLKLSCETLE NSRGPHLSPS NYNISNSLKQ 840 QKVDSSSTNS QAQVVMDEAI QSQFVNSQPS SFAQGQAKEA DAQALSELTR ALDKKELVLS 900 ALKCMNSEIE ESQKDGNKAL KDSEPFKKQY AAVLFQLSEI NEQVSSALLR LRQRNTYQAS 960 SSYMPFRCMN TSGDPDGHLT CLDNSVSESH DHGPHVSEIV ESSRTKARSM VNRAMEAMTS 1020 LKTEKNNVVN IEEAIDFVND NLSVDCAEAP VQRPQVAHDQ LLASGPNPAI DSRSNPLGRN 1080 DPQIPSELVS RCVATLLMIQ KCTERQFPPS EVAEVLDSAV ASLQPSCSQN FPIYAEIQKC 1140 MGIIRNQILA LVPT |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 472 | 477 | MRKRRQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010551055.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551054.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 3 isoform X1 | ||||
Refseq | XP_010551055.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 3 isoform X1 | ||||
Swissprot | Q6A332 | 0.0 | ALY3_ARATH; Protein ALWAYS EARLY 3 | ||||
TrEMBL | D7L0S7 | 0.0 | D7L0S7_ARALL; Always early protein 3 | ||||
STRING | XP_010551054.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Publications ? help Back to Top | |||
---|---|---|---|
|