PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010551054.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 1154aa MW: 129312 Da PI: 9.3493

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010551054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.4	8.7e-10	44	79	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e+++da +++G++ Wk++a+ + +R+ +++ XP_010551054.1 44 QWSKEELERFYDAYRKFGKE-WKKVAAFVR-TRSIEMV 79 6*****************.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.08E-10	39	90	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-4	41	89	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-4	44	77	IPR009057	Homeodomain-like
Pfam	PF00249	3.1E-8	44	79	IPR001005	SANT/Myb domain
CDD	cd00167	1.55E-5	45	87	No hit	No description
SMART	SM01135	1.9E-56	630	731	IPR033471	DIRP domain
Pfam	PF06584	9.7E-31	630	730	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1154 aa Download sequence Send to blast
MAPSKKSKYK KASRVNVVSP NKDEENKSKT RQRKRKLSDM LGPQWSKEEL ERFYDAYRKF 60 GKEWKKVAAF VRTRSIEMVE ALYTMNKAYL SLPEGTASVV GLIAMMTDHY TVLHGGSDSE 120 QESNEGTNTP RKGQKLARVK SSDHLSKGLE GLSDRLQFRS SSGSLSLLKR RRTETVPRAV 180 GKRTPRIPVS FSREKDKRER YLSPVKRGLK LKGDAIDDDM EHEIALALAE ALQRGGSPQV 240 SRTPNRKEKM YSPYKKDEKM RAEIDMAIAK LHSSDMDEGG CELSLGSTEA DNGDFAGPRN 300 YLMHGEGSSA VEMLQKGKRY YMQKLDVDES PNNRTDDVKE ACSGTEEGQH LGPCKDKFEP 360 EGVVENSSKP TYKSSRRKSK KVLFTADEGA ACDALQTLAD LSLMMPDTAT DTESSIQVKE 420 ERAAKADESD LKGSGPAPRS KMGSLKFSKQ RKSTTDVLSN TEAERKSPSS IVMRKRRQKS 480 SPVKVPKDEA PSSSQFAESP NRKGIDEGKR PVGRGKRSTN IPNSHGKKSV KHHDHTSSSN 540 GIVEGNGTAL STAQTYKKQV NLPTKGRRRR KTPAEKLLTD EDGKSSEILV NGFSNTQIQS 600 LNDKSLNLKE KLSHYLSSYR SRRWCVFEWF YSAIDYPWFS RQEFVEYLDH VGLGHVPRFT 660 RVEWGVIRSS LGKPRRFSEQ FLKEEKEKLY LYRDSVRKYY VKLNAGVREG LPTDLARPLN 720 VGQRVIALHP RTREIHDGSV LTFDHSKYRV QFDHSDLGVE FVKDTECMPL NPLQNIPASL 780 AQQYVSLNHH IQNHSMLKMH EQEIENMPEG YLKLSCETLE NSRGPHLSPS NYNISNSLKQ 840 QKVDSSSTNS QAQVVMDEAI QSQFVNSQPS SFAQGQAKEA DAQALSELTR ALDKKELVLS 900 ALKCMNSEIE ESQKDGNKAL KDSEPFKKQY AAVLFQLSEI NEQVSSALLR LRQRNTYQAS 960 SSYMPFRCMN TSGDPDGHLT CLDNSVSESH DHGPHVSEIV ESSRTKARSM VNRAMEAMTS 1020 LKTEKNNVVN IEEAIDFVND NLSVDCAEAP VQRPQVAHDQ LLASGPNPAI DSRSNPLGRN 1080 DPQIPSELVS RCVATLLMIQ KCTERQFPPS EVAEVLDSAV ASLQPSCSQN FPIYAEIQKC 1140 MGIIRNQILA LVPT

Sequence ? help Back to Top

Protein Sequence Length: 1154 aa Download sequence Send to blast

MAPSKKSKYK KASRVNVVSP NKDEENKSKT RQRKRKLSDM LGPQWSKEEL ERFYDAYRKF  60
GKEWKKVAAF VRTRSIEMVE ALYTMNKAYL SLPEGTASVV GLIAMMTDHY TVLHGGSDSE  120
QESNEGTNTP RKGQKLARVK SSDHLSKGLE GLSDRLQFRS SSGSLSLLKR RRTETVPRAV  180
GKRTPRIPVS FSREKDKRER YLSPVKRGLK LKGDAIDDDM EHEIALALAE ALQRGGSPQV  240
SRTPNRKEKM YSPYKKDEKM RAEIDMAIAK LHSSDMDEGG CELSLGSTEA DNGDFAGPRN  300
YLMHGEGSSA VEMLQKGKRY YMQKLDVDES PNNRTDDVKE ACSGTEEGQH LGPCKDKFEP  360
EGVVENSSKP TYKSSRRKSK KVLFTADEGA ACDALQTLAD LSLMMPDTAT DTESSIQVKE  420
ERAAKADESD LKGSGPAPRS KMGSLKFSKQ RKSTTDVLSN TEAERKSPSS IVMRKRRQKS  480
SPVKVPKDEA PSSSQFAESP NRKGIDEGKR PVGRGKRSTN IPNSHGKKSV KHHDHTSSSN  540
GIVEGNGTAL STAQTYKKQV NLPTKGRRRR KTPAEKLLTD EDGKSSEILV NGFSNTQIQS  600
LNDKSLNLKE KLSHYLSSYR SRRWCVFEWF YSAIDYPWFS RQEFVEYLDH VGLGHVPRFT  660
RVEWGVIRSS LGKPRRFSEQ FLKEEKEKLY LYRDSVRKYY VKLNAGVREG LPTDLARPLN  720
VGQRVIALHP RTREIHDGSV LTFDHSKYRV QFDHSDLGVE FVKDTECMPL NPLQNIPASL  780
AQQYVSLNHH IQNHSMLKMH EQEIENMPEG YLKLSCETLE NSRGPHLSPS NYNISNSLKQ  840
QKVDSSSTNS QAQVVMDEAI QSQFVNSQPS SFAQGQAKEA DAQALSELTR ALDKKELVLS  900
ALKCMNSEIE ESQKDGNKAL KDSEPFKKQY AAVLFQLSEI NEQVSSALLR LRQRNTYQAS  960
SSYMPFRCMN TSGDPDGHLT CLDNSVSESH DHGPHVSEIV ESSRTKARSM VNRAMEAMTS  1020
LKTEKNNVVN IEEAIDFVND NLSVDCAEAP VQRPQVAHDQ LLASGPNPAI DSRSNPLGRN  1080
DPQIPSELVS RCVATLLMIQ KCTERQFPPS EVAEVLDSAV ASLQPSCSQN FPIYAEIQKC  1140
MGIIRNQILA LVPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	472	477	MRKRRQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010551054.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010551054.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_010551055.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	D7L0S7	0.0	D7L0S7_ARALL; Always early protein 3
STRING	XP_010551054.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]