PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010550978.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 1039aa MW: 115773 Da PI: 9.9167

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010550978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.6	7e-09	43	79	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+ E e+++da +++G + Wk++a+ + ++R+ +++ XP_010550978.1 43 QWTKGELERFYDAYRKHGQD-WKKVAASVRNNRSVEMV 79 6***************99.*******99998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.19	39	93	IPR017884	SANT domain
SuperFamily	SSF46689	5.31E-8	42	89	IPR009057	Homeodomain-like
Pfam	PF00249	3.8E-7	43	80	IPR001005	SANT/Myb domain
CDD	cd00167	9.08E-4	44	86	No hit	No description
SMART	SM01135	7.7E-59	619	720	IPR033471	DIRP domain
Pfam	PF06584	5.5E-32	619	719	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1039 aa Download sequence Send to blast
MAPGRKSRSV NKRFSNETSP EKDVWNSSKS KQRKKLSDKL GPQWTKGELE RFYDAYRKHG 60 QDWKKVAASV RNNRSVEMVE ALFYMNRAYL SLPEGTASVA GLIAMMTDHY SVMDGSDSEG 120 EGHAASGVRK KYQKGKRTKE SREETNIPHS IASADGCLSF LKQAQAFGSQ RRATGKRTPR 180 FPVPSSYRRE DREGSTPLSK RARKPVDNDD VAHFVALALT DASKRGGSES PYRRTEHSDS 240 SPIKSWGKMS QAREAQSKLR DSSMCEEWVE GNRERKRKKG GSDRDATSLM DMEGVGTVEV 300 LRRGKKFYGK KAKVEEAKGI DSDDSGEACS ATEGLRSKSQ KGKVDVEASR GKFSPHGPKK 360 RNKKLQFGDE FDALQALAEL SASMLPAALM ESESSAQLKE EGTANDMDEK SSTPEATSTS 420 HHGEKSKQVE PEESVLHAIS AVENTKYRKP KSSRQASADG IAGPAGKQQQ QPSGTLRRRR 480 KPKVLDAEPP TDSNQNKSTL MKESAHDENA KSVVKTKRTV QVPAQSKQLK TVKTLEESSS 540 ASDKKTLPVS ASASLPQKPQ NRRKMGLKKT LQERVKFSET TPKASYVNES LLEHELLKEK 600 LSSCLSYPLA RRRCIFEWFY SAIDYPWFAK MEFVDYLNHV GLGHVPRLTR LEWSVIKSSL 660 GRPRRFSERF LQEERDKLKQ YRESVRKHYT ELRAGAREGL PTDLARPLSV GNKVIAIHPK 720 TREIHDGKIL TVDHNKCSVL FDRDDLGVEF VKDIDCMPLN PLEYMPEGLR RQIDMCMAIS 780 KEAHLNRHPN FEGSVIFPSS VLENASLYMK QGDTNGPILQ AKILATNTTS PQQATNNHPF 840 ITTFSKAREV EIQRALAVQR SLNEKEIEPE MLEIVKGSKS RAQAMVDAAI KAASSVKEGE 900 DASKKIQEAI DSIGKHLPLH SSMVPGVKHQ EHANGSLDHH LSQSPSDALE SLVNGSISQD 960 GSGKNEGQMP SELISSCVAT WLMIQMCTER QYPPADVAQL IDTAVMSLHP RCPQNLPIYR 1020 EIQTCMGRIK TQILALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1039 aa Download sequence Send to blast

MAPGRKSRSV NKRFSNETSP EKDVWNSSKS KQRKKLSDKL GPQWTKGELE RFYDAYRKHG  60
QDWKKVAASV RNNRSVEMVE ALFYMNRAYL SLPEGTASVA GLIAMMTDHY SVMDGSDSEG  120
EGHAASGVRK KYQKGKRTKE SREETNIPHS IASADGCLSF LKQAQAFGSQ RRATGKRTPR  180
FPVPSSYRRE DREGSTPLSK RARKPVDNDD VAHFVALALT DASKRGGSES PYRRTEHSDS  240
SPIKSWGKMS QAREAQSKLR DSSMCEEWVE GNRERKRKKG GSDRDATSLM DMEGVGTVEV  300
LRRGKKFYGK KAKVEEAKGI DSDDSGEACS ATEGLRSKSQ KGKVDVEASR GKFSPHGPKK  360
RNKKLQFGDE FDALQALAEL SASMLPAALM ESESSAQLKE EGTANDMDEK SSTPEATSTS  420
HHGEKSKQVE PEESVLHAIS AVENTKYRKP KSSRQASADG IAGPAGKQQQ QPSGTLRRRR  480
KPKVLDAEPP TDSNQNKSTL MKESAHDENA KSVVKTKRTV QVPAQSKQLK TVKTLEESSS  540
ASDKKTLPVS ASASLPQKPQ NRRKMGLKKT LQERVKFSET TPKASYVNES LLEHELLKEK  600
LSSCLSYPLA RRRCIFEWFY SAIDYPWFAK MEFVDYLNHV GLGHVPRLTR LEWSVIKSSL  660
GRPRRFSERF LQEERDKLKQ YRESVRKHYT ELRAGAREGL PTDLARPLSV GNKVIAIHPK  720
TREIHDGKIL TVDHNKCSVL FDRDDLGVEF VKDIDCMPLN PLEYMPEGLR RQIDMCMAIS  780
KEAHLNRHPN FEGSVIFPSS VLENASLYMK QGDTNGPILQ AKILATNTTS PQQATNNHPF  840
ITTFSKAREV EIQRALAVQR SLNEKEIEPE MLEIVKGSKS RAQAMVDAAI KAASSVKEGE  900
DASKKIQEAI DSIGKHLPLH SSMVPGVKHQ EHANGSLDHH LSQSPSDALE SLVNGSISQD  960
GSGKNEGQMP SELISSCVAT WLMIQMCTER QYPPADVAQL IDTAVMSLHP RCPQNLPIYR  1020
EIQTCMGRIK TQILALVPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	274	278	RKRKK
2	475	481	LRRRRKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010550978.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010550978.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like isoform X2
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	A0A1J3IUE4	0.0	A0A1J3IUE4_NOCCA; Protein ALWAYS EARLY 2
STRING	XP_010550977.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-151	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]