PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010550862.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Trihelix

Protein Properties

Length: 355aa MW: 41272 Da PI: 4.3652

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010550862.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.3	3.9e-13	108	193	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e +L+e+ ++ +l+r++l+ +W ev++k+ +e e+s + C++ +++l+++ykk+k+ +k s+++++f++l+ XP_010550862.1 108 QWTEHEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVsEELRGEKSETLCRSMMDELKRKYKKEKAKLEKS-GSGSTKWVFFNKLD 193 7***********************************666677*********************996.555569****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.1E-19	107	194	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MDESEDDARY SKKLYSLNRQ KHPMYSRPIP KRHAYYREEE GDDEEEEGNE LNEYPEQDDG 60 EDGVPQGYNN RKLGSSEGLQ RFPKRQKQIK SVYGYEFAGP SDAKLAHQWT EHEAFVLLEV 120 WGDRFLQLGR RSLRNEDWNE VAEKVSEELR GEKSETLCRS MMDELKRKYK KEKAKLEKSG 180 SGSTKWVFFN KLDMLLGSSP RSDSGLACGL DSGEFVFMSA RVYLDKSNRF DEMMDSPGAS 240 ETGDEEEEED DDDTEDRGRK VIDSGSYRLL ADSVQSLGKI YERIENSKRK HMRDLEKMRA 300 DFQRELELQK KQILERSQAE IAKISEEGDD EDDDDEDHND NDCEMDEDSF ANLSE

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MDESEDDARY SKKLYSLNRQ KHPMYSRPIP KRHAYYREEE GDDEEEEGNE LNEYPEQDDG  60
EDGVPQGYNN RKLGSSEGLQ RFPKRQKQIK SVYGYEFAGP SDAKLAHQWT EHEAFVLLEV  120
WGDRFLQLGR RSLRNEDWNE VAEKVSEELR GEKSETLCRS MMDELKRKYK KEKAKLEKSG  180
SGSTKWVFFN KLDMLLGSSP RSDSGLACGL DSGEFVFMSA RVYLDKSNRF DEMMDSPGAS  240
ETGDEEEEED DDDTEDRGRK VIDSGSYRLL ADSVQSLGKI YERIENSKRK HMRDLEKMRA  300
DFQRELELQK KQILERSQAE IAKISEEGDD EDDDDEDHND NDCEMDEDSF ANLSE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010550862.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010550862.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	A0A087HCA4	1e-136	A0A087HCA4_ARAAL; Uncharacterized protein
STRING	XP_010550862.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-126	Trihelix family protein