PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010550821.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | GATA | ||||||||
Protein Properties | Length: 301aa MW: 32696.2 Da PI: 6.9106 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.1 | 1.8e-16 | 224 | 260 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ kg+ XP_010550821.1 224 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 260 *****99999************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.439 | 77 | 112 | IPR010399 | Tify domain |
SMART | SM00979 | 5.5E-12 | 77 | 112 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.6E-12 | 81 | 111 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.987 | 148 | 190 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.1E-15 | 148 | 190 | IPR010402 | CCT domain |
SMART | SM00401 | 2.5E-13 | 218 | 271 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.605 | 218 | 279 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.09E-13 | 220 | 283 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 9.7E-16 | 222 | 265 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.31E-15 | 223 | 275 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 224 | 251 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.0E-14 | 224 | 260 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MDGLHGSDAR MHMGDAQDPM HVQYEHHGLH HINNGNGMVD EHADGGATGE MNEGVETDIP 60 SHPGNLSDSR GEVVDRGTEN GDQLTLSFQG QVYVFDSVSA EKVQAVLLLL GGREVPQAVS 120 TALGSTTPQN NRALVLSGTP QRFSVPQRLA SLVRFREKRK GRNFDKKIRY TVRKEVALRM 180 QRNKGQFTSA KSSNDDSASA GSSWGSNHTW GAEGSDSQTQ EISCRHCGIS EKSTPMMRRG 240 PEGPRTLCNA CGLMWANKGT LRDLSKATPP AAQNMLVIRN EDENLEADQM VRVAGNISNS 300 S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010550821.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010550818.1 | 0.0 | PREDICTED: GATA transcription factor 28 | ||||
Refseq | XP_010550819.1 | 0.0 | PREDICTED: GATA transcription factor 28 | ||||
Refseq | XP_010550820.1 | 0.0 | PREDICTED: GATA transcription factor 28 | ||||
Refseq | XP_010550821.1 | 0.0 | PREDICTED: GATA transcription factor 28 | ||||
Swissprot | Q8H1G0 | 1e-174 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | R0IMP1 | 1e-180 | R0IMP1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010550818.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-151 | ZIM-LIKE 2 |