PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010550738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 239aa MW: 25968.2 Da PI: 5.0219 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.3 | 3.6e-56 | 53 | 157 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl XP_010550738.1 53 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 147 89*****998899********************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivprde+k XP_010550738.1 148 VDIVPRDEIK 157 *******975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.04E-34 | 48 | 147 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-20 | 75 | 138 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 7.2E-37 | 76 | 153 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048586 | Biological Process | regulation of long-day photoperiodism, flowering | ||||
GO:0051247 | Biological Process | positive regulation of protein metabolic process | ||||
GO:2000905 | Biological Process | negative regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MDQNNNQQPH SSAYPPPPPP SAAAAASGGI VPSAAAAAGG TPYHHLLQQQ QQQLQMFWSY 60 QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI LELTIRSWLH 120 AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA ALGGMVTPTA SGVPYYYPPM 180 GQPTVGPGGM MIGRPAVDPT GVYVQPPSQA WQSVWQNSAD EVSYGSGGTS GQGNLEGQG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-55 | 61 | 153 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 125 | 131 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010550738.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010550738.1 | 1e-178 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9FMV5 | 1e-115 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | R0FL35 | 1e-126 | R0FL35_9BRAS; Uncharacterized protein | ||||
STRING | XP_010550738.1 | 1e-177 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48590.1 | 1e-114 | nuclear factor Y, subunit C1 |