PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010550597.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 454aa MW: 50250 Da PI: 9.4049

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010550597.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.8e-39	108	168	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss XP_010550597.1 108 PSKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSS 168 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-31	98	165	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.3E-32	110	166	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	112	166	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	114	150	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MLESRNPAIK LFGKKIPFPA ATEEKEKVAG DGEEEKSPEK GNTRDKPIEA AGQGLPESSE 60 KKKKNNSEDG HNSWQDSKSK GGDEDESSKD QSESTNSQEN DEKPLKKPSK ILPCPRCNSM 120 DTKFCYYNNY NINQPRHFCK ACQRYWTAGG TMRNVPVGAG RRKNKNSSSH YSHMTISEAL 180 QAARIDSTHH HPGLKTNGRV LSFGLQPHHT PICDSMASVL NLGDQKKALN GTRNGFHGLG 240 DQRLVARTEH RDDYSNGSSV TVSNNHSTDE ARASKCMRKS NNMNGFACIP SIPWPYTWNP 300 SMPPPGFFPP PPGFPMPFYP YWSIPMLSPQ SSPSSEKGSS LSGQNSPTLG KRSREEGTAK 360 TEEPENATDM TKHRNGTVLI PKTLRFDDPN DAAKSSIWTT LGIKNDLVSR GGMFKGFDHQ 420 MEKKTKNNGT AETSPVLRAN PAALSRLIDF HERM

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MLESRNPAIK LFGKKIPFPA ATEEKEKVAG DGEEEKSPEK GNTRDKPIEA AGQGLPESSE  60
KKKKNNSEDG HNSWQDSKSK GGDEDESSKD QSESTNSQEN DEKPLKKPSK ILPCPRCNSM  120
DTKFCYYNNY NINQPRHFCK ACQRYWTAGG TMRNVPVGAG RRKNKNSSSH YSHMTISEAL  180
QAARIDSTHH HPGLKTNGRV LSFGLQPHHT PICDSMASVL NLGDQKKALN GTRNGFHGLG  240
DQRLVARTEH RDDYSNGSSV TVSNNHSTDE ARASKCMRKS NNMNGFACIP SIPWPYTWNP  300
SMPPPGFFPP PPGFPMPFYP YWSIPMLSPQ SSPSSEKGSS LSGQNSPTLG KRSREEGTAK  360
TEEPENATDM TKHRNGTVLI PKTLRFDDPN DAAKSSIWTT LGIKNDLVSR GGMFKGFDHQ  420
MEKKTKNNGT AETSPVLRAN PAALSRLIDF HERM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010550597.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010550597.1	0.0	PREDICTED: cyclic dof factor 3
Swissprot	Q8LFV3	1e-161	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A1J3GKX5	1e-168	A0A1J3GKX5_NOCCA; Cyclic dof factor 3
STRING	XP_010550597.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-144	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]