PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550577.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 232aa    MW: 26660 Da    PI: 7.3092
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550577.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.6e-121665148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd +lvd     G+g  +W+ +++  g++R++k+c++rw +yl
   XP_010550577.1 16 KGPWMAEEDRKLVDFLGTRGSGgwCWRDVPKLTGLRRCGKSCRLRWTNYL 65
                     79**********************************************97 PP
2Myb_DNA-binding49.41.1e-1573114346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        T++E +l +d++++lG++ W++Ia++++ gRt++++k++w++
   XP_010550577.1  73 LLTEDEVQLVIDLHARLGNR-WSKIAAELP-GRTDNDIKNYWNT 114
                      569*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-17766IPR009057Homeodomain-like
PROSITE profilePS5129411.8851165IPR017930Myb domain
SuperFamilySSF466891.09E-2313112IPR009057Homeodomain-like
SMARTSM007172.8E-41567IPR001005SANT/Myb domain
PfamPF002491.7E-101665IPR001005SANT/Myb domain
CDDcd001675.73E-41865No hitNo description
PROSITE profilePS5129425.91866120IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2467121IPR009057Homeodomain-like
SMARTSM007172.7E-1470118IPR001005SANT/Myb domain
PfamPF002494.2E-1473114IPR001005SANT/Myb domain
CDDcd001677.85E-1175114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGGHRQPCCD KIGLKKGPWM AEEDRKLVDF LGTRGSGGWC WRDVPKLTGL RRCGKSCRLR  60
WTNYLRPDIK RGLLTEDEVQ LVIDLHARLG NRWSKIAAEL PGRTDNDIKN YWNTRIKRRL  120
IKTGIDPNTH RPFDQQKVNP RVQEGKAVNE ENPPIEPEAT SDNKNSEASL INPTWWDNDD  180
QSWSFLMDNA GVGEFTMLLS GNISSSSSWW LKIEEFSKED LELGCFDDNT RV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141205108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00577DAPTransfer from AT5G62320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550577.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550577.11e-171PREDICTED: protein ODORANT1
SwissprotQ50EX68e-67ODO1_PETHY; Protein ODORANT1
TrEMBLA0A3P5Z2U21e-103A0A3P5Z2U2_BRACM; Uncharacterized protein
STRINGXP_010550577.11e-170(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62320.14e-97myb domain protein 99
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]