PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010550549.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 410aa MW: 44727.2 Da PI: 7.2418

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010550549.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	2.9e-39	77	136	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ XP_010550549.1 77 PDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHF 136 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	65	134	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.1E-32	79	135	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.528	81	135	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	83	119	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MDGCDLPKPR DPAIKLFGRK IRLPGSQIPT KPIFSERDAK EGDNISGNPN GVIVNCESKE 60 EQSGVDGTEE DKAFKKPDKI LQCPRCNSLD TKFCYFNNYN VNQPRHFCKN CQRYWTAGGT 120 MRNVPVGAGR RKNKHFASQY RQLLVSSDGN PVSKMDAADY SVSTQMIDSP SGNGTVLEFG 180 SDEPPLSRSM DTMPPQLGDQ RNVASSVGKR ESELSTSRSS ALETSSNSCS NDVTLDERAK 240 EQAPLPSSLP FYHVPSWRFP LNPCWSGFSS VTANGGNTSH FQLCPAPILA IPEAGFPPNI 300 PLQFIPSPYL ACRPVLQDPS FAPNGNCSLP STNKDCILES RESPPTLGKH SRDETGVEET 360 RVGKYVLVPK TSKLDQTDSA SSYPVWATFG IIPDQVACPS KVGGFRGLEP

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MDGCDLPKPR DPAIKLFGRK IRLPGSQIPT KPIFSERDAK EGDNISGNPN GVIVNCESKE  60
EQSGVDGTEE DKAFKKPDKI LQCPRCNSLD TKFCYFNNYN VNQPRHFCKN CQRYWTAGGT  120
MRNVPVGAGR RKNKHFASQY RQLLVSSDGN PVSKMDAADY SVSTQMIDSP SGNGTVLEFG  180
SDEPPLSRSM DTMPPQLGDQ RNVASSVGKR ESELSTSRSS ALETSSNSCS NDVTLDERAK  240
EQAPLPSSLP FYHVPSWRFP LNPCWSGFSS VTANGGNTSH FQLCPAPILA IPEAGFPPNI  300
PLQFIPSPYL ACRPVLQDPS FAPNGNCSLP STNKDCILES RESPPTLGKH SRDETGVEET  360
RVGKYVLVPK TSKLDQTDSA SSYPVWATFG IIPDQVACPS KVGGFRGLEP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010550549.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010550549.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A2K1Y217	1e-110	A0A2K1Y217_POPTR; Uncharacterized protein
STRING	XP_010550549.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15591	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	7e-43	cycling DOF factor 1