PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550466.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARR-B
Protein Properties Length: 495aa    MW: 55535.6 Da    PI: 5.1464
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550466.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.51.1e-26130184155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++Wt eLH++Fv+av+q+G  +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  XP_010550466.1 130 KARVVWTFELHQKFVHAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 184
                     68****************************************************8 PP
2Response_reg30.32.1e-1115453107
                     CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
    Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                     mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el
  XP_010550466.1   1 MPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 54 
                     9************6644.8*******************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001562.50E-12162No hitNo description
PfamPF000721.8E-8155IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23003.5E-20169No hitNo description
PROSITE profilePS5011024.025162IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521724.84E-15169IPR011006CheY-like superfamily
SuperFamilySSF466894.48E-17128188IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-28128189IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-22130184IPR006447Myb domain, plants
PfamPF002498.6E-8132183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MPDMDGFKLL EHVGLEMDLP VIMMSVDGET SRVMKGVQHG ACDYLLKPIR MKELKIIWQH  60
VLRKKLQEFR DVEGYEGAES IWISRHGLDQ SEDAHFLGGE EVSFGRKRKD TEKKQHQDDR  120
DLTDPSSTKK ARVVWTFELH QKFVHAVNQI GCDHKAGPKK ILDLMNVPWL TRENVASHLQ  180
KYRLYLSRLE KEKGQKNMDS PPKDAEVCPS HQSPRKIQPA EVQNSSYTFS GGSPGVQTPN  240
PSATDVDQKG IASTAVSETK ISNILSPQKA KKPRTGYDPS LAPFASEASP SVMNSSLPQQ  300
YSWNDVPQFL ESKPISLGGS FLPQPLTGQS YYAENPVPCL IETEVKPPFE IPVSSCLNRV  360
APVNGDDFLL QQDKNSTMGL HDLSAPSSIS GTMLQESNCS IPCNTESILR NLNWDFPEPH  420
PAASLDRDLG LFWLQGDRFL ENSGLQNTEF TDYNDPSFLA AYPLHMYDAT RFDNELLLLP  480
DQDEYSLVDQ GLFIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-18126189163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550466.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534176.10.0PREDICTED: two-component response regulator ARR11-like isoform X2
RefseqXP_010550456.10.0PREDICTED: two-component response regulator ARR11-like isoform X2
SwissprotQ9FXD61e-169ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A087HGC41e-174A0A087HGC4_ARAAL; Two-component response regulator
STRINGXP_010534175.10.0(Tarenaya hassleriana)
STRINGXP_010550447.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-172response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]