PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550447.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARR-B
Protein Properties Length: 561aa    MW: 63095.6 Da    PI: 5.2066
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550447.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.31.3e-26196250155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++Wt eLH++Fv+av+q+G  +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  XP_010550447.1 196 KARVVWTFELHQKFVHAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 250
                     68****************************************************8 PP
2Response_reg81.13.7e-27141201107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ G
  XP_010550447.1  14 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALKLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHG 106
                     89*********************.***************999999**********************6644.8********************** PP

                     ESEEEESS--HHHH CS
    Response_reg  94 akdflsKpfdpeel 107
                     a d+l Kp+ ++el
  XP_010550447.1 107 ACDYLLKPIRMKEL 120
                     *********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.9E-1451528IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.0E-4411135No hitNo description
SuperFamilySSF521721.08E-3511135IPR011006CheY-like superfamily
SMARTSM004488.1E-3212124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.87913128IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.6E-2414121IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.60E-3115128No hitNo description
SuperFamilySSF466895.38E-17194254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-28194255IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-22196250IPR006447Myb domain, plants
PfamPF002491.0E-7198249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MTMEKCFSPV GLRVLVVDDD PTWLKILEKM LKKCSYEVTT CGLAREALKL LRERKDGYDI  60
VISDVNMPDM DGFKLLEHVG LEMDLPVIMM SVDGETSRVM KGVQHGACDY LLKPIRMKEL  120
KIIWQHVLRK KLQEFRDVEG YEGAESIWIS RHGLDQSEDA HFLGGEEVSF GRKRKDTEKK  180
QHQDDRDLTD PSSTKKARVV WTFELHQKFV HAVNQIGCDH KAGPKKILDL MNVPWLTREN  240
VASHLQKYRL YLSRLEKEKG QKNMDSPPKD AEVCPSHQSP RKIQPAEVQN SSYTFSGGSP  300
GVQTPNPSAT DVDQKGIAST AVSETKISNI LSPQKAKKPR TGYDPSLAPF ASEASPSVMN  360
SSLPQQYSWN DVPQFLESKP ISLGGSFLPQ PLTGQSYYAE NPVPCLIETE VKPPFEIPVS  420
SCLNRVAPVN GDDFLLQQDK NSTMGLHDLS APSSISGTML QESNCSIPCN TESILRNLNW  480
DFPEPHPAAS LDRDLGLFWL QGDRFLENSG LQNTEFTDYN DPSFLAAYPL HMYDATRFDN  540
ELLLLPDQDE YSLVDQGLFI V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17192255163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550447.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534175.10.0PREDICTED: two-component response regulator ARR11-like isoform X1
RefseqXP_010550447.10.0PREDICTED: two-component response regulator ARR11-like isoform X1
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A087HGC40.0A0A087HGC4_ARAAL; Two-component response regulator
STRINGXP_010534175.10.0(Tarenaya hassleriana)
STRINGXP_010550447.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]