PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010550404.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ZF-HD

Protein Properties

Length: 272aa MW: 31282.2 Da PI: 9.5451

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010550404.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99	3.6e-31	83	139	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++vrY+ C+kNhAa++Ggh+vDGC+Efmps gee t++alkCaACgCHR+FHRr+ + XP_010550404.1 83 TTVRYRGCQKNHAAATGGHVVDGCCEFMPS-GEEETPEALKCAACGCHRSFHRRDIDG 139 689************************9.8888*****************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-19	76	139	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.2E-28	85	137	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	9.2E-27	86	136	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.749	87	136	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.8E-27	198	265	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.29E-17	200	265	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.4E-26	207	263	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MELEGKANAT FFSTIPSKTL DHHPQHTIVR PQTVLRRDPY PDPEAEPDPD PDPVSTSPPT 60 PPSPPAVSVA NRTNQRRRAR GETTVRYRGC QKNHAAATGG HVVDGCCEFM PSGEEETPEA 120 LKCAACGCHR SFHRRDIDGQ DSPAPYMYAH TTSKHVMTPT LYCSGSYRLL QPHAVHRTAE 180 IPRRSYSTED MNNVYQRRSG EEKGSRKKRF RTKINEEQKE KMKEFAERLG WRMQKKDEEE 240 VDKFCSQVNL RRQVFKVWMH NNKLKRNISH QK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	9e-21	208	263	18	73	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010550404.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010550403.1	0.0	PREDICTED: zinc-finger homeodomain protein 7-like
Swissprot	Q9SVL0	8e-76	ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBL	A0A1J3GQM7	5e-79	A0A1J3GQM7_NOCCA; Zinc-finger homeodomain protein 7
STRING	XP_010550403.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50890.1	1e-71	homeobox protein 28