PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550365.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 281aa    MW: 30905.6 Da    PI: 8.8403
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550365.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.6e-36131042102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d+++++++sw+e+g++fvv+++ +f++++Lp++Fkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+kell++
  XP_010550365.1  13 FLVKTYQLVDDPTTDDVVSWNEDGSAFVVWKTADFSRDLLPRFFKHNNFSSFVRQLNTYGFRKVVPDK---------WEFANENFRRGQKELLSE 98 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_010550365.1  99 IRRRKP 104
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-38496IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-599102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-3410102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.7E-3213102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-201336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-205163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAAAVQRSVP APFLVKTYQL VDDPTTDDVV SWNEDGSAFV VWKTADFSRD LLPRFFKHNN  60
FSSFVRQLNT YGFRKVVPDK WEFANENFRR GQKELLSEIR RRKPAAPMSS TAVNSAGAGA  120
GLSSQSNSGD ELGSTSTSFP DPNNPASVTT QFAELSGENE KLRRSNEILS SELASAKKQC  180
EELVAFLSEF LKVGRDQIDQ IIQRRSIGIV AGDGFDGGRG VGNEDEEKVS DNGEGLGGDV  240
KIFGVRLKCE KKKRARDESI RGPARALKIH APMLKSNRVC N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-25210219129Heat shock factor protein 1
5d5v_B1e-25210219129Heat shock factor protein 1
5d5v_D1e-25210219129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550365.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019058988.10.0PREDICTED: heat shock factor protein HSF24-like
SwissprotP223352e-92HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLV4UIJ91e-110V4UIJ9_9ROSI; Uncharacterized protein
STRINGXP_010550365.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-80heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]