PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010550337.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 26523.3 Da PI: 8.8955 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.3 | 1.9e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++q+ XP_010550337.1 2 SCNGCRVLRKGCSENCILRPCIqwiqtAEAQGHATIFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWRICQA 96 6*********************9998777889*************************************************************** PP DUF260 91 kaelall 97 ++e++l XP_010550337.1 97 AVETVLH 103 *998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.298 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSCNGCRVLR KGCSENCILR PCIQWIQTAE AQGHATIFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WRICQAAVET VLHGGSLQPI PELLTRGGGF 120 AGFPSPISDE TSEICTEILN LRRDVSGDRN TYHHCRFSSS RSRSTVSPPK RKRLASEQPS 180 SGLDLSLKPN FPVKTAPCKE EIRRAGTPSM NSEESVTMTL TRRSTFWGND VGESTKLLNL 240 FV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010550337.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010550337.1 | 1e-179 | PREDICTED: LOB domain-containing protein 37-like | ||||
Swissprot | Q9FN11 | 1e-124 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | R0HL69 | 1e-129 | R0HL69_9BRAS; Uncharacterized protein | ||||
STRING | XP_010550337.1 | 1e-179 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-120 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
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