PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010550310.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 298aa MW: 32829.4 Da PI: 10.0365

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010550310.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38	3.7e-12	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+tI + k R+ ++k++w++ XP_010550310.1 5 KQKWTAEEEAALKAGVLKYGTGKWRTILSDPEfssvlKSRSNVDLKDKWRN 55 79***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.88	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	8.97E-16	2	59	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-7	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-14	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	7.1E-8	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	1.20E-18	6	56	No hit	No description
SuperFamily	SSF46785	9.8E-14	117	193	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	2.2E-10	118	183	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	3.9E-10	118	189	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	18.402	120	188	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	4.8E-7	123	181	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV LKYGTGKWRT ILSDPEFSSV LKSRSNVDLK DKWRNISVTA 60 LWGSRKKAKL ALKRILPTPT QDVDSSTLST VPLSYDEGKT NSSPPKVSGE SPQNDASKRS 120 ITSLDKIILE ALANLKEPRG SDRTSIFLYI EDNFRTPLNV QRHVAVRLKH LTSIGTLIKT 180 KHIYRIAPDS VTTGTTRQRS PQLLLEGNKE EDTLNVEENG VSSLIKSRVD EELFKIKGIT 240 AQEAAVAAAR TVAEAEFAIA EAEEAAREAE KAEAEAEAAQ IFAKAAMKAL KHRMRNHI

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010550310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010550310.1	0.0	PREDICTED: telomere repeat-binding factor 2-like isoform X3
Swissprot	Q9FJW5	1e-113	TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBL	R0GN57	1e-120	R0GN57_9BRAS; Uncharacterized protein
STRING	XP_010550309.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67580.2	1e-96	MYB_related family protein

Publications ? help Back to Top
Lee WK,Cho MH Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana. Nucleic Acids Res., 2016. 44(10): p. 4610-24 [PMID:26857545] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]