PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010550265.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Nin-like | ||||||||
Protein Properties | Length: 184aa MW: 20869.2 Da PI: 10.6072 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 74.4 | 1.4e-23 | 46 | 92 | 2 | 48 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 + +++l+d+ kyF+lp+++AA+ ++vc+Tv+K+iCR+ G++RWPhRk XP_010550265.1 46 TGRLTLKDIGKYFHLPVEEAARIMKVCPTVVKKICRRGGLARWPHRK 92 5689******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.619 | 27 | 116 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.3E-19 | 49 | 92 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MASALVVAPA SASAHDQTTA VKSEEAGSSK KREKKRTPLA VQRERTGRLT LKDIGKYFHL 60 PVEEAARIMK VCPTVVKKIC RRGGLARWPH RKKTADKEHR EEDFEVEECR PRIQRKGLVL 120 NLRSRFLRMR SKRFVPKLSE TLIYRDCDPC DPGPNPVEIS SEGIATSRVE TVFSSPCNLP 180 TRFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 132 | RMRSKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010550265.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ415920 | 1e-81 | DQ415920.1 Cleome spinosa clone BAC Cs3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010550265.1 | 1e-133 | PREDICTED: uncharacterized protein LOC104821164 | ||||
STRING | XP_010550265.1 | 1e-132 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4076 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 2e-12 | RWP-RK domain-containing protein |