PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550157.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 354aa    MW: 38773.4 Da    PI: 4.867
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550157.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.98.7e-32551961128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.a...... 77 
                     lp+G++F+Ptdee++ e+L++k+  +            e    v ++v+i++++P++Lp  ++++  +++fF+k+ ++y tg+rk+r +      
  XP_010550157.1  55 LPKGVKFEPTDEEII-EHLEAKCGIDGsephvllE---EfiraVTEDVGINYTHPENLP-GANKDGVSVFFFHKTVQAYGTGQRKRRrItptsvn 144
                     799************.99****7666544666542...13333588899**********.445566799*****************954444433 PP

             NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                      +  +W++tg++k+v+  +g ++g+kk++v+yk   + +k+ek++Wv+h+y+l
  XP_010550157.1 145 DEPVRWHKTGRTKHVML-NGVQKGCKKIMVLYKSarKGSKPEKSNWVLHQYHL 196
                     23677************.999***********5433666778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3540214IPR003441NAC domain
PROSITE profilePS5100529.67955214IPR003441NAC domain
PfamPF023651.4E-1356196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MARAWIVDGP GIARKVKNAS VSSALQLKDC GAYIECPNCT HRIDNGNVLM PWPGLPKGVK  60
FEPTDEEIIE HLEAKCGIDG SEPHVLLEEF IRAVTEDVGI NYTHPENLPG ANKDGVSVFF  120
FHKTVQAYGT GQRKRRRITP TSVNDEPVRW HKTGRTKHVM LNGVQKGCKK IMVLYKSARK  180
GSKPEKSNWV LHQYHLGTEG NEIGEYVISK VMYQQQKQGE KNVEEEEVPE EGECSGAQAS  240
PRTPKTFTPA QLRPVSSIAG DEEAFDDTKM VVEGLENIPE ASFGSAGETA AVEDPDLKCK  300
ESIEASALWN NPEENPNSGL GNSQNVCGEL EIGSGNFAIS DLENADLGSP PEFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132136RKRRR
2133137KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550157.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550156.10.0PREDICTED: NAC domain-containing protein 8 isoform X1
RefseqXP_010550157.10.0PREDICTED: NAC domain-containing protein 8 isoform X2
TrEMBLA0A087H6731e-175A0A087H673_ARAAL; Uncharacterized protein
STRINGXP_010550156.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.11e-165NAC domain containing protein 44