PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550066.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 591aa    MW: 63484 Da    PI: 7.3727
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550066.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30253312159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  XP_010550066.1 253 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHT 312
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31238314IPR003657WRKY domain
SuperFamilySSF1182902.75E-27246314IPR003657WRKY domain
PROSITE profilePS5081129248314IPR003657WRKY domain
SMARTSM007741.7E-36253313IPR003657WRKY domain
PfamPF031067.2E-27254311IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MEVLPSSDSP VKDDVAASCP EDGCGHETRK VGFRKQRHES GRHSSPPTSK TNNMTGKKEG  60
DYELETAKAE MSEVKEENER LKMMLERIEN DYKSLKLRLF DVIRQDKTSA KPVRESLTDQ  120
DLCPSDQEHE LVSLSLGRRS SSPISKKEEK IGSTNSGAIE NEELTKAGLT LGFGSDGPSP  180
NTGASTENVV NSSRENSLEE RNNKEEEAGA ETWPPRKVAG KRSPDGDADD IGQQNQVKRA  240
RVCVRARCDT PTMNDGCQWR KYGQKIAKGN PCPRAYYRCT VAAGCPVRKQ VQRCADDMSI  300
LITTYEGTHN HTLPLSATAM ASTTSAAASM LLSGSSASAQ TTATTSASEM IGTGFNFNIY  360
DNSRFANKPF YSPAATVLSP LHPTVTLDLT APQPPSSSLS SLSFNRFSSS TSSRRFPSTS  420
FSFSSSSDSA AVNLPAMWGN ANGYTYSSLV PYSNVQSGQP NTLNIAKPAT QNPQTLTETL  480
TKALTSDPSF QSVIAAAIST MVGSGNGDQQ NGQNLIQKMN AQINNSPSNQ QTANSNKAGC  540
GGYFSSLLLS NMGNPQTGGP SEQTSSQLPF SIFKNTSSST TTSFVNKDDK S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-212533141777Probable WRKY transcription factor 4
2lex_A3e-212533141777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550066.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550066.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG81e-180WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A087G7980.0A0A087G798_ARAAL; Uncharacterized protein
STRINGXP_010550066.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-142WRKY DNA-binding protein 72