PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010550056.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ZF-HD | ||||||||
Protein Properties | Length: 101aa MW: 11081.4 Da PI: 5.4594 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 34.4 | 5.2e-11 | 3 | 36 | 23 | 57 |
ZF-HD_dimer 23 DGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 D C+ f+p geegt+++l C+ CgCH +FH + v XP_010550056.1 3 DFCKHFVPG-GEEGTPESLLCSGCGCHLSFHEKIV 36 78******9.999******************9875 PP | |||||||
2 | ZF-HD_dimer | 82.2 | 6e-26 | 47 | 99 | 3 | 56 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 ++rY eC+kNh ++G +++DGCgEfm++ ge+g+++++ CaACgCHR+FH re XP_010550056.1 47 SFRYGECKKNHGMDTGDYVLDGCGEFMAA-GEDGSPESFSCAACGCHRSFHHRE 99 689*************************9.999******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 11.937 | 1 | 35 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-4 | 3 | 39 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.0E-10 | 3 | 34 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-14 | 46 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 9.3E-25 | 48 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.7E-23 | 49 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.463 | 50 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MRDFCKHFVP GGEEGTPESL LCSGCGCHLS FHEKIVATLK MDVASESFRY GECKKNHGMD 60 TGDYVLDGCG EFMAAGEDGS PESFSCAACG CHRSFHHREY F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010550056.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010550056.1 | 9e-69 | PREDICTED: mini zinc finger protein 3-like | ||||
Swissprot | Q9LJW5 | 1e-17 | MIF2_ARATH; Mini zinc finger protein 2 | ||||
TrEMBL | A0A1J3CY77 | 1e-31 | A0A1J3CY77_NOCCA; Mini zinc finger protein 1 | ||||
STRING | XP_010550056.1 | 3e-68 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17489 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 5e-20 | mini zinc finger 2 |
Publications ? help Back to Top | |||
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