PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550055.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ZF-HD
Protein Properties Length: 282aa    MW: 30105.5 Da    PI: 8.4035
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.72.9e-3357111457
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                     v+Y+eClkNhAa +Ggha+DGCgEfmps++++ +++++l+CaACgCHRnFHRr+ 
  XP_010550055.1  57 VTYRECLKNHAAGIGGHALDGCGEFMPSSSTDpNDPTSLTCAACGCHRNFHRRDD 111
                     79**************************999999*******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-1753110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.0E-2857110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-3158110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.54159110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.73E-15168241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-26170241IPR009057Homeodomain-like
TIGRFAMsTIGR015659.8E-24182239IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEIAPMVTAT TTTTNTVTIP DPDSPDHEIG APTRFQPAKP ISFSNGKRHH HPALGPVTYR  60
ECLKNHAAGI GGHALDGCGE FMPSSSTDPN DPTSLTCAAC GCHRNFHRRD DPSSSPAAAV  120
EFRPQNRHHP MPPLPLPPPV RSPDDDSASP PPISSSYMLL SLSGGRNSSG GGATAVAPGT  180
HKRFRTKFSQ YQKERMLEFA ERLGWRMPKA AEDAGVREFC RQIGVEKGVF KVWMHNNKNN  240
GRGGARRGFT LSGGGVVAGD SREKVAESDH DGGTAAEGSF SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-211802411676ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163171GGRNSSGGG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550055.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550055.10.0PREDICTED: zinc-finger homeodomain protein 8-like
SwissprotQ9LXG01e-100ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLE4MXS62e-99E4MXS6_EUTHA; mRNA, clone: RTFL01-24-M06
TrEMBLV4N7A52e-99V4N7A5_EUTSA; Uncharacterized protein
STRINGXP_010550055.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.14e-71homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]