PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549838.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 482aa    MW: 53647.8 Da    PI: 4.8049
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549838.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.51.6e-36221132102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++e++sws+ +nsfvv++  efak++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_010549838.1  22 FLSKTYDMVDDPSNNEVVSWSSGNNSFVVWNVPEFAKELLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQLLKS 107
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k 
  XP_010549838.1 108 IVRRKP 113
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-3915106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.54E-3517111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.6E-6018111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-192245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-196072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MGSVREPLPA SAPPAVNSVP PFLSKTYDMV DDPSNNEVVS WSSGNNSFVV WNVPEFAKEL  60
LPKYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG QKQLLKSIVR RKPAHVHNLQ  120
QPHTQNSCVE VGKFGLEEEV ERLKRDKNVL MQELVRLRQQ QQATEQQLQN VGQKVQTMEQ  180
RQQQMMSFLA KAVQSPGFLN QFVQQQNDGN RCIGGKNKKR RLPGEDQENS SAHGTNGLNG  240
QIVKYQPSMN EATKAMLHQI LKMSSSPRCE PFTNNPDSFL LGDIPTPNAL DNISSSNRVS  300
GVTLAEVSPN PSVSCMSSAS NPTTNFQEPC RTEKVPEPNT HQSPADMVQP KLARRPDAAD  360
GSPDSDVIGC EVDNGGSMDP ITAVLDGSME LEADGISPQD SMDELLDGVP KLPAIHDSFW  420
EEFFAASPVV GDTDEIFLGG MERDLVMEQE SQSSERDDGY NNQHMEHLTE QMGLLRSETQ  480
GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-27911118129Heat shock factor protein 1
5d5v_B5e-27911118129Heat shock factor protein 1
5d5v_D5e-27911118129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549838.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549838.10.0PREDICTED: heat stress transcription factor A-1e
RefseqXP_010549839.10.0PREDICTED: heat stress transcription factor A-1e
SwissprotO818210.0HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLV4N7P10.0V4N7P1_EUTSA; Uncharacterized protein
STRINGXP_010549838.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.20.0heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]