PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549715.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 335aa    MW: 37363.3 Da    PI: 8.5286
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549715.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-1792137147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v q+G+ +W++Ia+++  gR++k+c++rw++ 
   XP_010549715.1  92 RGHWRPSEDAKLKELVSQFGPQNWNSIAQHLV-GRSGKSCRLRWFNQ 137
                      899*****************************.***********996 PP
2Myb_DNA-binding491.4e-15145187246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++T+eE+e+l  a+  +G++ W+tIar ++ gRt++ +k++w+ 
   XP_010549715.1 145 RAFTEEEEEKLMWAHGAFGNK-WATIARLFP-GRTDNAVKNHWHV 187
                      689******************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1687138IPR017930Myb domain
SMARTSM007173.8E-1491140IPR001005SANT/Myb domain
PfamPF002492.7E-1692137IPR001005SANT/Myb domain
SuperFamilySSF466894.87E-2892185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-2693145IPR009057Homeodomain-like
CDDcd001671.35E-1295136No hitNo description
PROSITE profilePS5129424.395139193IPR017930Myb domain
SMARTSM007171.1E-11143191IPR001005SANT/Myb domain
PfamPF002491.3E-12145186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-20146193IPR009057Homeodomain-like
CDDcd001671.41E-8146186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MNLKSHEKDL SSSIDGGSTR FEEQNFITPT SGPSSSNSLT ELSLSRNFLQ HPADEPNKNK  60
VSAFEINSDE SQDEGRREKK GRNATQRKVC ARGHWRPSED AKLKELVSQF GPQNWNSIAQ  120
HLVGRSGKSC RLRWFNQLDP RINKRAFTEE EEEKLMWAHG AFGNKWATIA RLFPGRTDNA  180
VKNHWHVIVA RKLRSSSENP ETTVLPSTGG GGDGVTRGSL VNGEGTESMA LSTSNDNESA  240
ASTCTATDLS LSPPRLWFSE NVLDPGEDQR AVGDVHFGKP MDRRNQIRHG HEVGRRHSSD  300
SDLFLDGSFA EMHRKKKEMI IRSRFFDFLG VGASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31921937108B-MYB
1h88_C4e-319219358159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-319219358159MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-319219327128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549715.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549715.10.0PREDICTED: myb-related protein 330
TrEMBLA0A087G8037e-83A0A087G803_ARAAL; Uncharacterized protein
STRINGXP_010549715.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99771836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.15e-80myb domain protein 56