PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549704.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 263aa    MW: 27885.1 Da    PI: 6.7899
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549704.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601278.6e-40441451101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ae+
  XP_010549704.1  44 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPANRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAEM 138
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                     a+++++l
  XP_010549704.1 139 AVVQTQL 145
                     **99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.10243145IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-3944142IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MADHPRGHDT SESRRKSAAA AGKRSTAASS EPPPPSCGGA PASPCGACKF LRRKCVSGCI  60
FAPHFGSDQG AARFAAVHKV FGASNVSKLL HHIPANRRHD AVVTISYEAQ ARLSDPVYGC  120
VSTILALQQQ VASLQAEMAV VQTQLINSRV AMADVMQQQS HHHHHHMVMQ QPEYSNNSSA  180
STTLAGATVT SFTVAAAGFD VVGSADEIVG TVGGPPRSFE HSLQPQPLPP GRQGGMEEEE  240
EEESDGDFQA AEGIFPGEIF HRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-37351463112LOB family transfactor Ramosa2.1
5ly0_B3e-37351463112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549704.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549704.10.0PREDICTED: LOB domain-containing protein 20 isoform X1
SwissprotQ9SRV31e-107LBD20_ARATH; LOB domain-containing protein 20
TrEMBLD7L1941e-108D7L194_ARALL; LOB domain protein 20
STRINGXP_010549704.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-74LOB domain-containing protein 20