PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549618.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 333aa    MW: 37275 Da    PI: 6.3511
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.31e-55201471129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdee++++yLk+kv ++ +++  +i e+d++k+ePwdLpk++k +eke yfF++rd+ky+tg+r+nrat+sgyWkatgkdke+++ 
  XP_010549618.1  20 LPPGFRFHPTDEEIITCYLKEKVFNSGFTA-VAIGEADLNKCEPWDLPKRAKMGEKEFYFFCQRDRKYPTGTRTNRATESGYWKATGKDKEIYKG 113
                     79*************************999.67***************99999*****************************************9 PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     kg lvg+kktLvfy+grap+gekt+Wvmheyrle
  XP_010549618.1 114 KGCLVGMKKTLVFYTGRAPRGEKTNWVMHEYRLE 147
                     ********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-6317172IPR003441NAC domain
PROSITE profilePS5100558.50420171IPR003441NAC domain
PfamPF023654.2E-2921146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAVVEEGLVL NHGGEELVDL PPGFRFHPTD EEIITCYLKE KVFNSGFTAV AIGEADLNKC  60
EPWDLPKRAK MGEKEFYFFC QRDRKYPTGT RTNRATESGY WKATGKDKEI YKGKGCLVGM  120
KKTLVFYTGR APRGEKTNWV MHEYRLEGKY SYHNLPKSAR DEWVVCRVFH KNTANPLMIR  180
NPMEDLARMD SLENLDHLLD FSSLPPLMDP SFPGQPGPSF SGEFKPINPT PAHDNHYTSY  240
FPYQSTLNPG SSSGSGSAYR GPNSNKGMIK LEHSLVSVSQ ETGLSSDVNV TATTPEISSC  300
PATKHDVSET AVMMINGNKS YDDLGDLGIL WDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-511817415168NO APICAL MERISTEM PROTEIN
1ut4_B3e-511817415168NO APICAL MERISTEM PROTEIN
1ut7_A3e-511817415168NO APICAL MERISTEM PROTEIN
1ut7_B3e-511817415168NO APICAL MERISTEM PROTEIN
3swm_A3e-511817418171NAC domain-containing protein 19
3swm_B3e-511817418171NAC domain-containing protein 19
3swm_C3e-511817418171NAC domain-containing protein 19
3swm_D3e-511817418171NAC domain-containing protein 19
3swp_A3e-511817418171NAC domain-containing protein 19
3swp_B3e-511817418171NAC domain-containing protein 19
3swp_C3e-511817418171NAC domain-containing protein 19
3swp_D3e-511817418171NAC domain-containing protein 19
4dul_A3e-511817415168NAC domain-containing protein 19
4dul_B3e-511817415168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549618.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549618.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FK441e-172NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A1J3IPJ21e-177A0A1J3IPJ2_NOCCA; Uncharacterized protein
STRINGXP_010549618.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-166Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]