PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549568.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23136 Da    PI: 4.7093
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549568.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.61e-201157349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    ++++  rqvtfskRr+g++KKA+EL +LC+aev +++fs+ gk + y
  XP_010549568.1 11 VQDTNTRQVTFSKRRTGLFKKASELATLCNAEVGIVVFSPGGKPFSY 57
                    678899**********************************9986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.9E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.408161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-27272IPR002100Transcription factor, MADS-box
CDDcd002658.56E-34274No hitNo description
PRINTSPR004041.4E-20323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-241257IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGRRKIEMEQ VQDTNTRQVT FSKRRTGLFK KASELATLCN AEVGIVVFSP GGKPFSYGNP  60
SVEAITERFM NDCEETDGDG DEVRAQQREA QQEEMNENLN VLTKELEAEK KRGETLQEQL  120
ESAGDERFLK PMESLSLDEL IEYKAALETM HAKIKGQATQ MQASTSLMLL STDNGSGLSI  180
AKLNDFSVNL SIYAKTSSSR FMNKVVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-16185187MEF2C
5f28_B8e-16185187MEF2C
5f28_C8e-16185187MEF2C
5f28_D8e-16185187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549568.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019058880.11e-128PREDICTED: agamous-like MADS-box protein AGL29
SwissprotO647035e-74AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBLV4MAC22e-72V4MAC2_EUTSA; Uncharacterized protein
STRINGXP_010549568.11e-151(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-75AGAMOUS-like 29
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]