PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010549536.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ARF | ||||||||
Protein Properties | Length: 805aa MW: 88777.9 Da PI: 6.3183 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.9 | 3.9e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_010549536.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVlppldytQQPPAR--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFI--WND 217 99*****************************96555544..8************************************************..788 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_010549536.1 218 KNQLLLGIRRA 228 8889****997 PP | |||||||
2 | Auxin_resp | 121 | 8.7e-40 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha st+s F+++YnPras++eFv++++k++ka++ +vsvGmRf+m+fetedss rr++Gtv+g+sd+dpvrWpnS+Wrs+k XP_010549536.1 253 AAHASSTNSRFTIFYNPRASPAEFVIPLAKYVKAVYhARVSVGMRFRMMFETEDSSVRRYMGTVTGISDMDPVRWPNSQWRSVK 336 79*********************************9779******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.62E-45 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.5E-39 | 119 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.27E-21 | 126 | 227 | No hit | No description |
PROSITE profile | PS50863 | 12.492 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-34 | 253 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.1E-7 | 664 | 757 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.77E-6 | 665 | 743 | No hit | No description |
PROSITE profile | PS51745 | 23.246 | 668 | 752 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 805 aa Download sequence Send to blast |
MRWSSSSFNP QADEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE 60 ADAQMPNYPS LQPQLICQLH NVTMHADVET DEVYAQMTLQ PLNPQEQKDP YFPVELGSPS 120 RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVLPPLDYTQ QPPARELIAR DLHDNEWKFR 180 HIFRGQPKRH LLTTGWSIFV SAKRLVAGDS VLFIWNDKNQ LLLGIRRANQ PQTIMPSLVL 240 SSDSMHLGLL AAAAHASSTN SRFTIFYNPR ASPAEFVIPL AKYVKAVYHA RVSVGMRFRM 300 MFETEDSSVR RYMGTVTGIS DMDPVRWPNS QWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSPFH LRLKRPWPPP GLSSFHGLKD VDDSGMSSCN RGLQSLNFPG FGVNPWMHAR 420 LDPPGLLGTG NDLYQAMAAA AFQDMRGIDP PSKALEPSSF STRPVSLLQP RIPQHRLSHQ 480 TFPSMPENQQ PHSRGQATGS SPLSLMSEFV SASQSLASPL PSTTPFSDSL GNNPMMGSAI 540 SPFHTLLGDF PENESLAMAS SGWPLKCAAV VDSSFLPLGS EQLGQSQESN VSSGSVSLPP 600 FPGRECSIEQ EGNADLHSHL LFGVNIDSSS LLMQSGIGIE SINDFSSIDG SGFPQSSENV 660 GFENPQSPTF VKVYKSGSFG RSLDISRYSS YNELRSSLAR MFGLEGQLED PMRSGWQLVF 720 VDRENDVLLL GDDPWLEFLN SVWCIKILSP QEVQEMGKRG LKPLSSEPSV RKKLTNGNCE 780 DFGNTHDPRN PGNGIASVAG SSFDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 16 | 357 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010549536.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010549536.1 | 0.0 | PREDICTED: auxin response factor 6-like | ||||
Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | V4L254 | 0.0 | V4L254_EUTSA; Auxin response factor | ||||
STRING | XP_010549536.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1344 | 28 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |