PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549333.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 326aa    MW: 34928 Da    PI: 9.8076
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549333.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.28.4e-3947107262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     +++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg++rknk+++
  XP_010549333.1  47 TQQPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSCRKNKRVK 107
                     67899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.5E-3349105IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.25551105IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-2651105IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105389IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MQRNNRVADA KSFNNMIVAP ALPSAGVLGL MNKTAQPQPQ TQTQTQTQQP LKCPRCDSSN  60
TKFCYYNNYS LSQPRHFCKA CKRYWTRGGT LRNVPVGGSC RKNKRVKRPP TSSVSNSSSL  120
DVSSNPTTSS STPIPNPQMN HFPSNGYVNP LLFGLSDASG GNNFPMISSR FGNSKGFESG  180
FGFSGFSDLG LGFPQIADSM GENKPFFSGL LGSLSSSPTP SMAALLASST FHSQKLVDGG  240
DHIPRNGEIL GQNHFQTLAS LQDLHAGGNN NNNEAAIVMN KEVKLHHQIS GYIALSSSDP  300
SNFNSNVVGT WLDPTTNVGS SLTSLI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549333.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549333.10.0PREDICTED: dof zinc finger protein DOF1.4
SwissprotQ9FZA43e-64DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLA0A078JJD94e-74A0A078JJD9_BRANA; BnaCnng51540D protein
TrEMBLA0A0D3D6964e-74A0A0D3D696_BRAOL; Uncharacterized protein
STRINGXP_010549333.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.22e-52Dof family protein