PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549146.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 417aa    MW: 47681.8 Da    PI: 8.9535
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549146.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP139.72.3e-431413102136
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 
                     a k+drhski+T++g+RdRR+Rls+e+a++fF Lqd+LGfdk+skt++WLl+qak +ik+l ++                               
  XP_010549146.1 141 ASKTDRHSKIYTAKGPRDRRMRLSLEVAREFFGLQDMLGFDKASKTVDWLLTQAKSEIKKLSRSlpkrfdsglmsseesqtpapgwigergskmn 235
                     789*************************************************************9999999999988876666666666655443 PP

             TCP  66 ....ssssaseceaesssssasnsssg.....kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                         s        + +++ sas+++++      ++k+++k+k+sq+++  +++l k+ r kar+ra+ert+ekm++++++
  XP_010549146.1 236 tgtdS-----TWADPHEVASASTNEIEidgksGKEKKKKKKKRSQSRNPIFRKLPKDARTKARERAKERTKEKMMMRQRS 310
                     22220.....22333334444434444777665666666777777777778*************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.7E-42142306IPR005333Transcription factor, TCP
PROSITE profilePS5136934.427143201IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.992286303IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MNNAINTNDL VFCPYNDRSS PPLLPNFSLS PSFNPNPKPS DDHYPRRHDL DDYNHHHHLL  60
DSSPSPQFEF DPESLYAIFL RPNNDHDDNN NNNNNRDLLP LNNNTVQDQR VDASETITHM  120
EDSKKVANSP YPARANPRKR ASKTDRHSKI YTAKGPRDRR MRLSLEVARE FFGLQDMLGF  180
DKASKTVDWL LTQAKSEIKK LSRSLPKRFD SGLMSSEESQ TPAPGWIGER GSKMNTGTDS  240
TWADPHEVAS ASTNEIEIDG KSGKEKKKKK KKRSQSRNPI FRKLPKDART KARERAKERT  300
KEKMMMRQRS SSEAAVYMKN GEVNDHLGTS SNWSSFETGE DSVQEVKEPS PSDQFVACNN  360
IGITQESLDI INKWSPFSLF NYHQNQGSAS SMENQYMDHH QLLGKPRNDF YNSQNMC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266272KKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549146.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549146.10.0PREDICTED: transcription factor TCP18-like
STRINGXP_010549146.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.11e-45TCP family protein