PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548822.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 300aa MW: 31974.4 Da PI: 7.9733

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548822.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.3	3.5e-38	68	127	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rk k+s XP_010548822.1 68 QEQLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKTTKRS 127 7899***************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-28	44	118	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.3E-33	69	125	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.143	71	125	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	73	109	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0042545	Biological Process	cell wall modification
GO:0045787	Biological Process	positive regulation of cell cycle
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MTLPTLSSLP VDFIALSSHK VQTFHRQFPF LSRDFPPNHW PDIPSDSGET RRAVARPHDG 60 AGSAPADQEQ LPCPRCDSTN TKFCYYNNYN FSQPRHFCKS CRRYWTHGGT LRDIPVGGGS 120 RKTTKRSRTC SSSSLTTATA VVSTSTDGRS FFFPANQVLF SSGTDSNGGS IPATVHEVKE 180 SASSLCGSFT SLLNNNASLL NNNAAVTTNG SSGLIGLNNF GLGLGSGFDD VAFGLGRAVW 240 QFSTVGDATA GVGSNGGPAP SMPATWHLES LHNNIGFIAG ECFAWPDLAI STTGNTFKWC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00402	DAP	Transfer from AT3G50410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548822.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP662922	3e-58	KP662922.1 Cajanus cajan Dof38 (Dof38) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548822.1	0.0	PREDICTED: dof zinc finger protein DOF3.4
Swissprot	Q39088	5e-78	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A1J3GFF3	1e-85	A0A1J3GFF3_NOCCA; Dof zinc finger protein DOF3.4 (Fragment)
STRING	XP_010548822.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	8e-66	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]