PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010548797.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | DBB | ||||||||
Protein Properties | Length: 172aa MW: 18886.9 Da PI: 6.2101 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.8 | 7.9e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C + H+ H++ XP_010548797.1 4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnvlskrHSR 44 6*****************************65677777765 PP | |||||||
2 | zf-B_box | 26.8 | 1e-08 | 46 | 88 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +C+++++++++ C+d ++ lC++C ++H H++ XP_010548797.1 46 LVCERCNSQPASVRCTDERVSLCQNCDWSGHVPsnpsashHQR 88 68****************************9324466666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.385 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.95E-6 | 4 | 47 | No hit | No description |
SMART | SM00336 | 8.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.599 | 43 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.4E-5 | 46 | 88 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.55E-5 | 47 | 91 | No hit | No description |
SMART | SM00336 | 0.4 | 48 | 91 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANVLSK RHSRTLVCER CNSQPASVRC 60 TDERVSLCQN CDWSGHVPSN PSASHHQRQT INCYSGCPSS AELGSFWSFV SDNSSPGQSE 120 CEQEMGLMSI ADDGPRENFT AQDVLAGSSS VHETGSRRNC AAKNIWWLAL SL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010548797.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019058668.1 | 1e-124 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9LUA9 | 2e-73 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A0B5AIA6 | 1e-71 | A0A0B5AIA6_9ROSI; CONSTANS-LIKE 9-1 | ||||
TrEMBL | A0A2I4HG75 | 3e-72 | A0A2I4HG75_JUGRE; zinc finger protein CONSTANS-LIKE 10-like | ||||
STRING | XP_010548797.1 | 1e-124 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 6e-76 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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