PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548769.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 351aa MW: 36979.5 Da PI: 10.4401

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548769.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.6e-05	41	63	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F++ L H++ H XP_010548769.1 41 FMCRYCDKAFRTTRALGGHQNAH 63 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.74E-6	38	68	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.9E-4	41	67	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.884	41	68	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	43	63	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MENHNQGEQS LSGKDKTENP SPISNGEQLQ EGGASSKPRI FMCRYCDKAF RTTRALGGHQ 60 NAHKREKDDE KLKKNKEVES LNSHSLSYLF NLQVINRSLD NTPSNNGGLS INVSPPPNGT 120 NPPAVARPNP KRNASDSDRS DQFNPMGADG SKRHRGMDLN IPPDDVPPSD NDGSSSDLVP 180 NPSPAPNPSP THVSPRNPAS KVVPPKNSGA SKGNNPPKNP ASKAGPSRNP VASNGGNPRK 240 NPASKAGPSK NSVASNGDNP PKNPASKAGP SRNSVASNGD NPPKNPASKD VGPSNNAVAS 300 NGDNPPKNPV SSKGASSSSS QKAVSKEDVL RDFVPSIERF ERMLWGQFLS L

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MENHNQGEQS LSGKDKTENP SPISNGEQLQ EGGASSKPRI FMCRYCDKAF RTTRALGGHQ  60
NAHKREKDDE KLKKNKEVES LNSHSLSYLF NLQVINRSLD NTPSNNGGLS INVSPPPNGT  120
NPPAVARPNP KRNASDSDRS DQFNPMGADG SKRHRGMDLN IPPDDVPPSD NDGSSSDLVP  180
NPSPAPNPSP THVSPRNPAS KVVPPKNSGA SKGNNPPKNP ASKAGPSRNP VASNGGNPRK  240
NPASKAGPSK NSVASNGDNP PKNPASKAGP SRNSVASNGD NPPKNPASKD VGPSNNAVAS  300
NGDNPPKNPV SSKGASSSSS QKAVSKEDVL RDFVPSIERF ERMLWGQFLS L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548769.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548769.1	0.0	PREDICTED: sporozoite surface protein 2-like
STRING	XP_010548769.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	9e-08	C2H2 family protein