PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548762.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GeBP

Protein Properties

Length: 456aa MW: 49668.6 Da PI: 5.2369

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548762.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	119.2	2.2e-37	136	233	2	97
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 lfqrlw++eDei lL+G++++ ++++g+s++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +fe+skk XP_010548762.1 136 LFQRLWTDEDEIELLRGFLEYmTTHRGSSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKINSGKEVFFKSPHDQATFEISKK 230 79*****************888999999999********************************************************** PP DUF573 95 iWg 97 iW XP_010548762.1 231 IWS 233 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.4E-34	137	233	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MDEAKGKDPS PLLALCPESR VEISSRNFGS SDSDEDLREN DDVVIPEGND ADEDDPEEDL 60 NSPSTSSLAV VSAVSTATAV ISGAEAMASP TAAVTVALPA GSAVAVAAIP VDSDQKWHHM 120 TEIVQQRAAL DDSRRLFQRL WTDEDEIELL RGFLEYMTTH RGSSSHPPDT APFYEQIKSK 180 LQLDFNKNQL VEKLRRLKKK YRNVMSKINS GKEVFFKSPH DQATFEISKK IWSHTGKIIG 240 FEDNNVLDFE ETNNHHLQHQ HHVNTTNGNS TFNNPSANLN MEIDAENGFE KKATMSNSSG 300 SRKRSRSRIG KMEEDKPITP CDGHVPNAAS NINLNENVTG AGGNLAGLIE ETVKNCVSPI 360 IKEMMNGTTA MMMAAVGGLP GAGGHGLGTL SLSPITMPPL NLGIGGGGGK GIMDERWRRQ 420 QMLELEVYSR RLELVQEQIR VALHELRTMP SSGGGG

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MDEAKGKDPS PLLALCPESR VEISSRNFGS SDSDEDLREN DDVVIPEGND ADEDDPEEDL  60
NSPSTSSLAV VSAVSTATAV ISGAEAMASP TAAVTVALPA GSAVAVAAIP VDSDQKWHHM  120
TEIVQQRAAL DDSRRLFQRL WTDEDEIELL RGFLEYMTTH RGSSSHPPDT APFYEQIKSK  180
LQLDFNKNQL VEKLRRLKKK YRNVMSKINS GKEVFFKSPH DQATFEISKK IWSHTGKIIG  240
FEDNNVLDFE ETNNHHLQHQ HHVNTTNGNS TFNNPSANLN MEIDAENGFE KKATMSNSSG  300
SRKRSRSRIG KMEEDKPITP CDGHVPNAAS NINLNENVTG AGGNLAGLIE ETVKNCVSPI  360
IKEMMNGTTA MMMAAVGGLP GAGGHGLGTL SLSPITMPPL NLGIGGGGGK GIMDERWRRQ  420
QMLELEVYSR RLELVQEQIR VALHELRTMP SSGGGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	302	307	KRSRSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548762.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548762.1	0.0	PREDICTED: probable transcription factor At3g04930
Swissprot	F4K5T4	0.0	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	R0I2K6	0.0	R0I2K6_9BRAS; Uncharacterized protein
STRING	XP_010548762.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.1	1e-140	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]