PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548717.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 409aa    MW: 45556.9 Da    PI: 6.6796
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548717.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.99e-14249296355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + hn +ErrRR +iN+++  L+e++P++      K +Ka++L +A eY + Lq
  XP_010548717.1 249 QVHNLAERRRRGNINDKLRALKEVMPHC-----NKSDKASVLDEAAEYTRCLQ 296
                     57*************************8.....6**************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-18246314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.694246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-18246315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-11249296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.34E-12251300No hitNo description
SMARTSM003532.0E-14252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDDDFLPGGY FDYEIPASSS SSLNHPSKSA MVEEEREEDI MKMLCHNGQA VTTSYPPPHQ  60
NLFIHEDEMA SWLHYPLHQH DFSPDLLASA SASTVLNEPP PLRPTNQVFA PRPPVPAENR  120
TVNQPRTVRN FENFYKLNST TGRGVELGQP SSASAVVREF PTSAPSEVSQ RAEGADTGWT  180
INSGASFVAS GGGAVISETS SSKGKAEQTF SPTEFAGDRK RKGKEITDET ECRSKGAKQE  240
SKRRYRSAQV HNLAERRRRG NINDKLRALK EVMPHCNKSD KASVLDEAAE YTRCLQLQVQ  300
MMSMGYHGMH QYMQLMPMGM NLPMPAMVHN HMRRQPFPTP PYPVSSRVHI PSQHADPAMQ  360
SLQPSWQQPF PGFFEPYQQF PGLDPMQASM LPNQETEQAS SSESSSSSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241258KRRYRSAQVHNLAERRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548717.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548717.10.0PREDICTED: transcription factor PIF1-like
STRINGXP_010548717.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71082643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.37e-66phytochrome interacting factor 3-like 5