PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548711.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 362aa    MW: 39410.1 Da    PI: 6.511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548711.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.63.1e-15209255455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn +Er+RR +iN+++  L+e++P++      K +Ka++L +AveY k+Lq
  XP_010548711.1 209 VHNLAERKRRGNINDKLRALKEVMPHC-----NKSDKASVLDEAVEYTKYLQ 255
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.39E-14201259No hitNo description
SuperFamilySSF474597.2E-19205271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-19205274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.412205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-13209255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-15211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MPQDDLMELL RHYVPESPRI SDDNPSPPPP ELAGAAADPP PPDQNLFIHE DEMASLLHYP  60
LHTPPLQATP TSQVPVPTPP VPPESGTANL PRTVRNFADS STFRWNSTTG GGGGVDSGQS  120
SLVMRASSPL AAGYHVKRWP GCDAAAALYE ISGTSSSKGE AEKSFSGTEI AGDRKRRGRE  180
AIDGSECRSE ETKQASGSTS KRRCRSAEVH NLAERKRRGN INDKLRALKE VMPHCNKSDK  240
ASVLDEAVEY TKYLQLQLQM MSMGYHGMQH MAMGMNPSMP AMSHNHMGGP PFPTSPFPVP  300
SRVHIPSQQA DPAVQSLQPP WQQPFPSFFE PYQQQFPGLD PMQASMLQSQ ETEQASSSGS  360
SK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200217KRRCRSAEVHNLAERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548711.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548709.10.0PREDICTED: transcription factor PIF1-like isoform X1
RefseqXP_010548710.10.0PREDICTED: transcription factor PIF1-like isoform X1
RefseqXP_010548711.10.0PREDICTED: transcription factor PIF1-like isoform X1
TrEMBLA0A178VU826e-59A0A178VU82_ARATH; PIL5
STRINGXP_010548709.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-47phytochrome interacting factor 3-like 5