PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548705.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CPP
Protein Properties Length: 444aa    MW: 48067.8 Da    PI: 6.4954
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548705.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR24.17.5e-084291642
             TCR 16 kYCeCfaagkkCseeCkCedCkNkeek 42
                    +YCeCfa+g++C+  C+C++C+N+ e+
  XP_010548705.1  4 RYCECFASGTYCDG-CNCTNCFNNVEN 29
                    6*************.********9875 PP
2TCR51.52e-1674113140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  XP_010548705.1  74 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNYE 113
                     589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163432.5411114IPR005172CRC domain
PfamPF036389.2E-5426IPR005172CRC domain
SMARTSM011140.014429IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011141.1E-1974115IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-1277112IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MIYRYCECFA SGTYCDGCNC TNCFNNVENE AARREAVDAT LDRNPNAFRP KIASSPHGAC  60
DSREEVGEVL VLGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCLDCK NYEGSEERQA  120
LFHGGEHANN MGYLQQEAKA AITGAVGSCG FASSPAPKRK KSQEIIFSQA TEDPSVHRLS  180
HFHQANSGIS TGPMSSRSPQ VPVSRASGNV SLGPSKFLYR SLLADIIQPQ DVKALCSVLV  240
AVAGEAAKTL ADERIETEKR MEVQKETFLA SSAQDQGQGV KAEKVETGDG KPCGEDSNSE  300
DGRPLSPTTL ELMCDEEDTM FILAASSNAS VDADSEKTSQ LPNGKGLSEI YAERERIVLT  360
KFWDCLHRLI SYGELKESNC SSFARTHRGM AAALETEAGF NQGPTMNGVS RPSTQSTTKP  420
PLPRLTATSV QNPSNTHLHK APQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-27512325132Protein lin-54 homolog
5fd3_B8e-27512325132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548705.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548705.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLV4MD100.0V4MD10_EUTSA; Uncharacterized protein
STRINGXP_010548704.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.10.0Tesmin/TSO1-like CXC domain-containing protein