PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548672.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 263aa    MW: 29838.5 Da    PI: 8.5344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.5e-0970123155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +++ hn+ Er RR ++  ++  L +llP  +  a++kK s   i  +A  +I +Lq
  XP_010548672.1  70 KKQEHNAKERLRRMKLHASYLALGTLLPDsP--ASKKKWSAPVIIDRALTCIPELQ 123
                     6899*************************66..78888**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-1163134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.63669122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-970135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-570123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-570127No hitNo description
SMARTSM003535.6E-575128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MNHHHHHQEH VASDHHLQNK TTSETAAHHQ ETRGRGRGKE VAAVVADDEH EHEHEHDERD  60
HEEDGSSCAK KQEHNAKERL RRMKLHASYL ALGTLLPDSP ASKKKWSAPV IIDRALTCIP  120
ELQNEVEHLT LRKRQILTAI ETGKKKKLSD KGKSSEQGSD RAVPMVSVHD LGRDGEILVQ  180
ICVKNDERNH QDRFGDLLHA IESQGMGILS SSSAALVSSD QCILSHHLHV KFQHGKGKKN  240
VGFRCEAFRD RFRFYRVRIG VRV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131146RKRQILTAIETGKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548672.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548672.10.0PREDICTED: uncharacterized protein LOC104820026 isoform X1
SwissprotF4I8F94e-36BH160_ARATH; Transcription factor bHLH160
TrEMBLA0A1J3J7M17e-49A0A1J3J7M1_NOCCA; Transcription factor ORG2
STRINGXP_010548672.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105582234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.14e-31bHLH family protein
Publications ? help Back to Top
  1. Yan J, et al.
    Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis.
    Plant Cell, 2017. 29(12): p. 3012-3029
    [PMID:29114014]