PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548469.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GRF

Protein Properties

Length: 518aa MW: 55643.8 Da PI: 8.4652

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548469.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.4	1.4e-24	212	255	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_010548469.1 212 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 255 79***************************************998 PP
2	QLQ	52.8	1.2e-18	146	182	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+++L++Q+l+yKy+ an+P+P+ Ll+ ++k XP_010548469.1 146 GPFTLTQWAELEQQALIYKYITANVPIPSSLLLSLKK 182 59******************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	8.2E-11	146	182	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.026	147	182	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.3E-12	147	179	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.954	212	256	IPR014977	WRC domain
Pfam	PF08879	3.3E-21	213	255	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MDLGVRVQGS VPGHENGAPT QSELGSGFAK QDRSGFDGED YWRSSKLGRT EDFSGCKTLS 60 FHQGIPLLRS TSLVSSDPRR QEHMLSFSSS DKSEALDFSK DDGLDNKSCL SPYLQQFASS 120 YSRNAGFDSG GMMNTSMHGN VTGVRGPFTL TQWAELEQQA LIYKYITANV PIPSSLLLSL 180 KKSFYPYAHG SLPPNSFGWG SFHLGFSGGN MDPEPGRCRR TDGKKWRCSR DAVPDQKYCE 240 RHINRGRHRS RKPVEGHSGH NAASKAAIPS PLKASAASNP STDSLANRVQ NSRGASVFPS 300 TVSSQHKESP VAHQKQENPF EFGLSSSASL MNMSQKSSYM NSAKGFGSYL DFSGQEKHSS 360 NPNIVSWPEE LKSDWTQLSM SIPMASSEFS ASPASPAQEK LALSPLRLSR EFDPTIQMGL 420 GVNAEILEPV KKVNNWIPIS WGSSLGGPLG EVLNSTTNSP KLGSSPTGVL QKSSFCSLSN 480 SSSGSSPVGE NKKGGDGAGL CEDLLGQTLL SSSSAPSM

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MDLGVRVQGS VPGHENGAPT QSELGSGFAK QDRSGFDGED YWRSSKLGRT EDFSGCKTLS  60
FHQGIPLLRS TSLVSSDPRR QEHMLSFSSS DKSEALDFSK DDGLDNKSCL SPYLQQFASS  120
YSRNAGFDSG GMMNTSMHGN VTGVRGPFTL TQWAELEQQA LIYKYITANV PIPSSLLLSL  180
KKSFYPYAHG SLPPNSFGWG SFHLGFSGGN MDPEPGRCRR TDGKKWRCSR DAVPDQKYCE  240
RHINRGRHRS RKPVEGHSGH NAASKAAIPS PLKASAASNP STDSLANRVQ NSRGASVFPS  300
TVSSQHKESP VAHQKQENPF EFGLSSSASL MNMSQKSSYM NSAKGFGSYL DFSGQEKHSS  360
NPNIVSWPEE LKSDWTQLSM SIPMASSEFS ASPASPAQEK LALSPLRLSR EFDPTIQMGL  420
GVNAEILEPV KKVNNWIPIS WGSSLGGPLG EVLNSTTNSP KLGSSPTGVL QKSSFCSLSN  480
SSSGSSPVGE NKKGGDGAGL CEDLLGQTLL SSSSAPSM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269\|PubMed:12974814, ECO:0000269\|PubMed:15326298, ECO:0000269\|PubMed:22419826, ECO:0000269\|PubMed:22751317}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548469.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165, ECO:0000269\|PubMed:22419826}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548469.1	0.0	PREDICTED: growth-regulating factor 1-like
Swissprot	O81001	0.0	GRF1_ARATH; Growth-regulating factor 1
TrEMBL	V4M1W3	0.0	V4M1W3_EUTSA; Uncharacterized protein
STRING	XP_010548469.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1454	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	0.0	growth-regulating factor 1

Publications ? help Back to Top
Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. Plant Cell, 2013. 25(9): p. 3570-83 [PMID:24076976] Liu J,Rice JH,Chen N,Baum TJ,Hewezi T Synchronization of developmental processes and defense signaling by growth regulating transcription factors. PLoS ONE, 2014. 9(5): p. e98477 [PMID:24875638] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]