PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548432.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 328aa    MW: 35424.7 Da    PI: 8.0535
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548432.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.61.8e-201358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + 
   XP_010548432.1 13 KGPWSPEEDELLQKLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58
                     79******************************.***********985 PP
2Myb_DNA-binding52.89.4e-1767109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
   XP_010548432.1  67 AFTSEEDETIIRAHARFGNK-WATIARLLT-GRTDNAIKNHWNST 109
                      79******************.********9.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.406863IPR017930Myb domain
SuperFamilySSF466895.99E-3210106IPR009057Homeodomain-like
SMARTSM007172.0E-181261IPR001005SANT/Myb domain
PfamPF002494.2E-201358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-271466IPR009057Homeodomain-like
CDDcd001671.44E-171557No hitNo description
SMARTSM007171.3E-1364112IPR001005SANT/Myb domain
PROSITE profilePS5129419.98465114IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2267113IPR009057Homeodomain-like
PfamPF002495.4E-1467109IPR001005SANT/Myb domain
CDDcd001675.11E-1167110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSGPSRREME RIKGPWSPEE DELLQKLVEK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PEVEHRAFTS EEDETIIRAH ARFGNKWATI ARLLTGRTDN AIKNHWNSTL KRKCVAMVPG  120
GEGQNCDFAT NGGYDCDLTA EQPLKRTASG GSGGGGVSTG LYMIPGSPSG SDVSEQYSSE  180
PCPPPSHVYK PTARAGAVVV PPMDVTSSSS ASGEPGTSLS LSLLWTDGSE STTVRVTEST  240
QLQKTMTQKT SSKDGLTAEF FPMRREDERT NGLSGFMAVV QEMIRAEVRS YMADLQRGNG  300
GGGGSCSVGR VGFKEFIPIN QIGVGKME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-42101131104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548432.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548432.10.0PREDICTED: transcription factor MYB44 isoform X1
SwissprotO231601e-140MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A3P6FLB31e-146A0A3P6FLB3_BRAOL; Uncharacterized protein
STRINGXP_010548434.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-118myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]