PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548428.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 654aa    MW: 73134.1 Da    PI: 6.1553
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548428.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3727.7e-23126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  XP_010548428.1 126 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 216
                     99****************************964333..4459************************************************..449 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+v+v+r+
  XP_010548428.1 217 NGELRVGVRRH 227
                     999******96 PP
2Auxin_resp112.24.9e-37252334183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t+++F+v+Y+Pr+s+seF+v+v+++++a ++k+svGmRfkm+fe+e+++err+sGt+vgv++ +++ W++S+WrsLk
  XP_010548428.1 252 ASHAMTTGTIFSVFYKPRTSRSEFIVSVNRYLEAKNHKLSVGMRFKMRFEGEEAPERRFSGTIVGVKENKSTVWSDSEWRSLK 334
                     689******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-43113255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-40123241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-20124226No hitNo description
PfamPF023621.2E-20126227IPR003340B3 DNA binding domain
PROSITE profilePS5086311.42126228IPR003340B3 DNA binding domain
SMARTSM010192.8E-22126228IPR003340B3 DNA binding domain
PfamPF065072.0E-34252334IPR010525Auxin response factor
PfamPF023093.8E-6513565IPR033389AUX/IAA domain
PROSITE profilePS5174526.693529611IPR000270PB1 domain
SuperFamilySSF542773.2E-11532606No hitNo description
PfamPF023096.1E-6569617IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MATASNNPSG RPCGGKSNDA LYRELWNACA GPLVTLPCEG ERVYYFPEGH MEQLEASMHQ  60
GLEQQMPSFN LPSKILCKVI NVQLRAEPET DEVYAQITLF PEEDQSEVTS LDAAVPEPEK  120
YTVHSFCKTL TASDTSTHGG FSVLRRHADD CLPPLDMSQQ PPWQELVATD LHGNEWHFRH  180
IFRGQPRRHL LTTGWSVFVS SKKLVAGDAF IFLRGENGEL RVGVRRHMRQ LTNMPSSVIS  240
SHSMHLGVLA TASHAMTTGT IFSVFYKPRT SRSEFIVSVN RYLEAKNHKL SVGMRFKMRF  300
EGEEAPERRF SGTIVGVKEN KSTVWSDSEW RSLKVQWDET ACVLRPERVS AWEIEPLVAV  360
NTNPSTNSQP PQRNKRSRPP PGMWKSSAET QSSRPFFSPP SKTSPFVFGG NISHGVVSSG  420
SAFWPNRVDS AVESEASAFN KESTVKKKQA TGNVCRLFGI ELFENGNAEE CFSTASVSGA  480
ALVDQPVLSN EFDSDQPLDV NRSDLPSSGS DHEKSSQRSP QELQSRQIRS CTKVHMQGSA  540
VGRAVDLTRL ECYKDLFKKL EEMFDIEGEL LESTKRWQVV YTDDEDDMMM VGDDPWHEFC  600
GMVRKIFIYT TEEVKKLSAK IKFAERGEAV LPSKACGEEE TGNMEDRSSS VVGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.043573355Auxin response factor 1
4ldw_A0.043573355Auxin response factor 1
4ldw_B0.043573355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548428.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548428.10.0PREDICTED: auxin response factor 1
RefseqXP_010548436.10.0PREDICTED: auxin response factor 1
RefseqXP_010548444.10.0PREDICTED: auxin response factor 1
RefseqXP_010548451.10.0PREDICTED: auxin response factor 1
RefseqXP_010548460.10.0PREDICTED: auxin response factor 1
RefseqXP_010548467.10.0PREDICTED: auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLF4ID310.0F4ID31_ARATH; Auxin response factor
STRINGXP_010548428.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88252227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]