PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010548419.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 26849 Da PI: 7.3858 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.6 | 1.4e-15 | 156 | 201 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+++Lq XP_010548419.1 156 HNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLQQLQ 201 9************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-18 | 149 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-19 | 149 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.701 | 151 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.0E-13 | 156 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.77E-15 | 156 | 203 | No hit | No description |
SMART | SM00353 | 5.8E-16 | 157 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGDKNMISSS SSSSVYDTRD PSDEITQFLR QILVRRSSPR PSYSPATYED CSHAPEPRPS 60 ASPPSDVLAK RAISAIDLSD GDRSGSATSF RSSGVRFFVD AAAIRRSSSS VGTSGNETDD 120 YDCESKEGME VVVDELPAKP APPRSSCKRS RAAEIHNLSE KRRRSRINEK MKALQNLIPN 180 SNKTDKASML DEAIEYLQQL QVQMLTMRNR LSLHPMCLTS GPLYLPEIRP LTTDQFASIS 240 NEN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010548419.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269|PubMed:11245574}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010548419.1 | 1e-178 | PREDICTED: transcription factor SPATULA-like | ||||
Refseq | XP_010548420.1 | 1e-178 | PREDICTED: transcription factor SPATULA-like | ||||
Swissprot | Q9FUA4 | 4e-56 | SPT_ARATH; Transcription factor SPATULA | ||||
TrEMBL | A0A078I4L0 | 5e-63 | A0A078I4L0_BRANA; BnaA08g15580D protein | ||||
TrEMBL | A0A397YC47 | 5e-63 | A0A397YC47_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D291 | 5e-63 | M4D291_BRARP; Uncharacterized protein | ||||
STRING | XP_010548419.1 | 1e-177 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4199 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 3e-48 | bHLH family protein |