PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548375.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

TALE

Protein Properties

Length: 756aa MW: 82182.3 Da PI: 7.1378

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548375.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.7e-09	552	589	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + XP_010548375.1 552 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 589 664459******************************88 PP
2	BELL	121.8	3e-39	411	482	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls++eeVd+rY++y+eq+q+v++sF+ v+g+g+a pYt+lA+ka+SrhFrcLkda++ q+ XP_010548375.1 411 DRIEHQRRKVKLLSMVEEVDRRYNHYCEQMQMVMNSFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAVSAQL 482 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.5E-80	336	480	IPR006563	POX domain
Pfam	PF07526	7.1E-50	341	479	IPR006563	POX domain
PROSITE profile	PS50071	12.568	530	593	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	533	597	IPR001356	Homeobox domain
CDD	cd00086	1.38E-12	533	594	No hit	No description
SuperFamily	SSF46689	3.55E-17	535	600	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.1E-29	536	599	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	550	589	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MGIATTPNII SSHHQSIKIL DNNSPSSSSS SSSSSSDLSM SQDYHHHHHN HQSIFTFSNG 60 FDRSSSTLTT HQSQHPPQQV GIDEDSASGA GIPVYETAGM LSEMFSFPGG PSASGELLDQ 120 SLPPSYNPTN SVTTRQLLEQ QHRHRHQNIP GMNAMDSATA AAAAMQLFLM NPPPPQPTTQ 180 RSPSPSPPQE STTNNNSTLH MLLPNHHQDY STAYNNNNSA IQHQLHQQFT WSDHQHHGQV 240 AASAEIGTVH VEGGQGLSLS LSSSLAAAAK AEEYRNIYYG NNHGMAGASP SSNTPAHHQY 300 NHFKGLLDSS HHHHHHHHQA VGHFVSPSAS SSSSSIAGIN ILRNSKYTKA AQELLEEFCS 360 VGRGHFKKSK YGRNTANPTT SGGGSGGGGG GGSSSPAAAA GKDHPPLSAA DRIEHQRRKV 420 KLLSMVEEVD RRYNHYCEQM QMVMNSFDLV MGYGAAVPYT ALAQKAMSRH FRCLKDAVSA 480 QLRHSCELLG EKDAAGSASG LTKGETPRLR LLEQSLRQQR AFHQMGMMEQ EAWRPQRGLP 540 ERSVNILRAW LFEHFLHPYP SDADKHLLAR QTGLSRNQVS NWFINARVRL WKPMVEEMYQ 600 QEAKEEEEEE EEGEQEAQQQ QQRRKQQTNN STKPNNNNSS STVVQTKAQT PTPSTTTATA 660 TTATGHHQRS EINAHETDPS LLLPPSPSAA FAAAAVAAAD FGTANANTGD IGNPSGGIMR 720 FGTNPSGDVS LTLGLRHVGN MPEKEPSFSV RDFGGF

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MGIATTPNII SSHHQSIKIL DNNSPSSSSS SSSSSSDLSM SQDYHHHHHN HQSIFTFSNG  60
FDRSSSTLTT HQSQHPPQQV GIDEDSASGA GIPVYETAGM LSEMFSFPGG PSASGELLDQ  120
SLPPSYNPTN SVTTRQLLEQ QHRHRHQNIP GMNAMDSATA AAAAMQLFLM NPPPPQPTTQ  180
RSPSPSPPQE STTNNNSTLH MLLPNHHQDY STAYNNNNSA IQHQLHQQFT WSDHQHHGQV  240
AASAEIGTVH VEGGQGLSLS LSSSLAAAAK AEEYRNIYYG NNHGMAGASP SSNTPAHHQY  300
NHFKGLLDSS HHHHHHHHQA VGHFVSPSAS SSSSSIAGIN ILRNSKYTKA AQELLEEFCS  360
VGRGHFKKSK YGRNTANPTT SGGGSGGGGG GGSSSPAAAA GKDHPPLSAA DRIEHQRRKV  420
KLLSMVEEVD RRYNHYCEQM QMVMNSFDLV MGYGAAVPYT ALAQKAMSRH FRCLKDAVSA  480
QLRHSCELLG EKDAAGSASG LTKGETPRLR LLEQSLRQQR AFHQMGMMEQ EAWRPQRGLP  540
ERSVNILRAW LFEHFLHPYP SDADKHLLAR QTGLSRNQVS NWFINARVRL WKPMVEEMYQ  600
QEAKEEEEEE EEGEQEAQQQ QQRRKQQTNN STKPNNNNSS STVVQTKAQT PTPSTTTATA  660
TTATGHHQRS EINAHETDPS LLLPPSPSAA FAAAAVAAAD FGTANANTGD IGNPSGGIMR  720
FGTNPSGDVS LTLGLRHVGN MPEKEPSFSV RDFGGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	539	597	5	63	Homeobox protein Meis2
3k2a_B	2e-16	539	597	5	63	Homeobox protein Meis2
4xrm_A	2e-16	539	597	5	63	Homeobox protein Meis2
4xrm_B	2e-16	539	597	5	63	Homeobox protein Meis2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	380	392	SGGGSGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548375.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548375.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Refseq	XP_010548376.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q9SW80	0.0	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	R0GH26	0.0	R0GH26_9BRAS; Uncharacterized protein
STRING	XP_010548375.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-175	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]