PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548352.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bZIP
Protein Properties Length: 315aa    MW: 33657.1 Da    PI: 7.5515
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548352.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_177.81.3e-24237299163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkr++rkq+NRe+ArrsR+RK+ae+e+L+ +v++L++eN+ L++el++ ++e+++lkse+
  XP_010548352.1 237 ERELKRQKRKQSNRESARRSRLRKQAECEQLQHRVESLTSENHGLREELQRFSEECERLKSEN 299
                     89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.9E-30194IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1707.4E-20234297No hitNo description
SMARTSM003386.9E-23237301IPR004827Basic-leucine zipper domain
PfamPF001702.8E-22237299IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.288239302IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.31E-12240297No hitNo description
CDDcd147026.67E-23242292No hitNo description
PROSITE patternPS000360244259IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGTGEGSTPS KSSKPSSSTQ EVPSVPYPDW SSSVQAYYGV GGTPAAFFPT PVASPSPHPY  60
MWGAQHPMMP PYGTPVPYPA LYPPGGIYAH PSMPMAPNSA PANTENVVKD QTSAKKSKEN  120
SKGKGEGGEK KGAASGSGND GVSRSGESET EDSSDGNDEN TNQQAKGSSR KGSSEQTMAD  180
GIVPVKAVAP SSNLNIGMDL WSPEGASKMR PNTSNAIVPA PPLAARGGVP SEQWIDEREL  240
KRQKRKQSNR ESARRSRLRK QAECEQLQHR VESLTSENHG LREELQRFSE ECERLKSENN  300
SIKDELTRLC GTGAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253259RRSRLRK
2253260RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548352.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548352.10.0PREDICTED: G-box-binding factor 1-like isoform X2
SwissprotP427741e-130GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A1J3DZ241e-132A0A1J3DZ24_NOCCA; G-box-binding factor 1
TrEMBLA0A2I4F4121e-132A0A2I4F412_JUGRE; G-box-binding factor 1-like isoform X2
STRINGXP_010548349.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.15e-95G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]