PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548330.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 230aa    MW: 25266.7 Da    PI: 6.9604
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.42.7e-20103137135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     CsnC tt+TplWR+gp g+k+LCnaCG++++k+++
  XP_010548330.1 103 CSNCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 137
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.07597133IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-1897149IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-14100140No hitNo description
Gene3DG3DSA:3.30.50.102.9E-17101137IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.39E-14102134No hitNo description
PROSITE patternPS003440103128IPR000679Zinc finger, GATA-type
PfamPF003206.5E-18103137IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRFSTSSYQ EKNPRFFALF PPENDAVFAP CSSSCSPVDC TLSLATPSST PLIRQEDKHL  60
FGSSATSSGM IGWDDCKTAS YLSDHQPPRS VIRDGDTLLS RRCSNCDTTS TPLWRNGPKG  120
PKSLCNACGI RFKKEERRAT AGKSNSGEGS SAAEAGVRNQ TYNGGPNYSY NHCYDSSSTW  180
HHQTTQRVPC SYYSPSTSEY TFIDDVRDGD SDVTAAPFLS WRLNVADQLY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548330.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548330.11e-171PREDICTED: GATA transcription factor 19-like
SwissprotQ6QPM22e-51GAT19_ARATH; GATA transcription factor 19
TrEMBLA0A3P6B1R12e-57A0A3P6B1R1_BRAOL; Uncharacterized protein
STRINGXP_010548330.11e-171(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.19e-48GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]